RNA id: TCONS_00035823


Basic Information

Item Value
RNA id TCONS_00035823
length 632
RNA type mRNA
GC content 0.41
exon number 4
gene id XLOC_018177
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 31002188 ~ 31067306 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGTCCACAACCAAAAACCAAGTATTAAATTTGGCACATTTGTGAACTAGGACAAGATTATGaagaaaacacaacagaaatgtaatGTTTACTGAATTTCACTACCTGCATTAAGTTaccacaaatattttaaaatcttttttgttaCCAGTTGAGTTGTACTTTATAAAATGGACAGATTGAGAGCCAAATCCAATTTGTGTACACTCCATATGTAAACTACATTCAGAAAGACCCTGGAGCTCCCTGCTCCCTGACTGAGGCTCTGGAGTATTTGCAAGTGGACGTTTTAGCAGACCTGATGGAGAAAGACCAACAGTCTTCCAATCAGAAGCAGCCACCCAAAAACAAGCCCCACAATGTGACTGTTGTTGCTATGGAGGGCTGTCACTCCTTTGTGATTTTGGACTGGGCGCGTCCACTAAAAGACGACATGGTGTCAGGCTACATGGTACACAGTGCCTCCTATGACGACGTTCTGAATAACAGATGGTCAGAACAACCCTCAACTGGAACACACCTCCCTGTTGAAAACCTCAAACCTAATTCAAGATATTACTTCAGAGTTCAAGCAAAGAATATTTTTGGACTGGGGCCATTCAGTGAAACTTTAACATACGTCACAGAGTCAG

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:0051186 obsolete cofactor metabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:0043648 dicarboxylic acid metabolic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0017144 drug metabolic process biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process
GO:0005829 cytosol cellular_component
GO:0045239 tricarboxylic acid cycle enzyme complex cellular_component
GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-041210-332 Orthologous to human FNDC1 (fibronectin type III domain containing 1).

Ensembl:

ensembl_id ENSDART00000136039

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036873 lncRNA downstream 34355 30965883 ~ 30973173 (-) False XLOC_018176
TCONS_00036872 lncRNA downstream 35170 30965883 ~ 30972358 (-) False XLOC_018176
TCONS_00036871 lncRNA downstream 36286 30965883 ~ 30971242 (-) False XLOC_018176
TCONS_00036484 lncRNA downstream 36401 30966945 ~ 30971127 (-) True XLOC_018176
TCONS_00036870 lncRNA downstream 36561 30965883 ~ 30970967 (-) False XLOC_018176
TCONS_00036875 lncRNA upstream 292357 31310926 ~ 31346581 (-) True XLOC_018181
TCONS_00036876 lncRNA upstream 539299 31557868 ~ 31744506 (-) True XLOC_018183
TCONS_00036877 lncRNA upstream 917455 31936024 ~ 31967211 (-) False XLOC_018185
TCONS_00036485 lncRNA upstream 962883 31981452 ~ 31983851 (-) False XLOC_018185
TCONS_00036878 lncRNA upstream 977621 31996190 ~ 32004402 (-) True XLOC_018185
TCONS_00035820 mRNA downstream 69282 30931414 ~ 30938246 (-) False XLOC_018175
TCONS_00035821 mRNA downstream 69344 30934655 ~ 30938184 (-) True XLOC_018175
TCONS_00035819 mRNA downstream 76382 30926212 ~ 30931146 (-) True XLOC_018174
TCONS_00035818 mRNA downstream 76389 30922595 ~ 30931139 (-) False XLOC_018174
TCONS_00035817 mRNA downstream 87172 30902138 ~ 30920356 (-) False XLOC_018173
TCONS_00035825 mRNA upstream 54323 31072892 ~ 31075972 (-) True XLOC_018179
TCONS_00035826 mRNA upstream 214354 31232923 ~ 31252809 (-) False XLOC_018180
TCONS_00035827 mRNA upstream 214357 31232926 ~ 31238313 (-) False XLOC_018180
TCONS_00035828 mRNA upstream 219501 31238070 ~ 31308805 (-) True XLOC_018180
TCONS_00035829 mRNA upstream 290795 31309364 ~ 31427390 (-) False XLOC_018181
TCONS_00035814 other downstream 632622 30374686 ~ 30374906 (-) True XLOC_018169
TCONS_00035813 other downstream 633444 30373865 ~ 30374084 (-) True XLOC_018168
TCONS_00035812 other downstream 634101 30373207 ~ 30373427 (-) True XLOC_018167
TCONS_00035811 other downstream 634645 30372663 ~ 30372883 (-) True XLOC_018166
TCONS_00035788 other downstream 1512093 29495300 ~ 29495435 (-) True XLOC_018151
TCONS_00035824 other upstream 26506 31045075 ~ 31045205 (-) True XLOC_018178
TCONS_00035840 other upstream 991441 32010010 ~ 32010999 (-) False XLOC_018186
TCONS_00035855 other upstream 1441706 32460275 ~ 32460391 (-) True XLOC_018195
TCONS_00035856 other upstream 1631274 32649843 ~ 32649959 (-) True XLOC_018196
TCONS_00035866 other upstream 2452652 33471221 ~ 33475485 (-) True XLOC_018202

Expression Profile

//