RNA id: TCONS_00035819


Basic Information

Item Value
RNA id TCONS_00035819
length 656
RNA type mRNA
GC content 0.51
exon number 5
gene id XLOC_018174
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 30922595 ~ 30931146 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGAAGTAGGACGTTCCGCAGTACAACCTGCATTCAGACAGAGTCAGCCTACCAAGCACATAACCAACCTACCGGACAGCAAAGATGAACACGGATGCGATTGTTATCGTTTCTGCCGCAAGGACTCCTATAGGTCACGGGCAGAACCCTGCGCGGCAGGCAAGTGTTGGTGCTGGTGTCCCATACTCAGTTCCAGCATGGAGCTGTCAGATGATCTGCGGATCTGGCCTGAAGTCTGTGTGCCTTGGTGCTCAGTCCATAATGACGAAAGAATCCACTATAGTGGTAGCAGGAGGCATGGAGAGCATGAGTCGGGCCCCTCATATAGTGCAAATGAGGTCAGGGGTGAAGATGGGAGATGCTACTCTGCAGGACACTATATTGACTGATGGACTCACAGATGCTTTTTATAATTACCACATGGGAATCACAGCGGAGAATGTGGCCAAGCAGTGGGGGGTGTCCCGTGAGGCTCAAGATCAACTGGCTGTGACGTCACAGAACCGAACTGAAGCAGCTCAGAAGGCTGGTTATTTTGACAAGGAAATTGTGCCAGTCACCGTTCCCTCTAGAAAAGGTCCAGTCGAGGTCAAAGTTGATGAGTTTCCTCGGCATGGCAGCAATATTGATGCTATGTCCAAACTGAAGCCCTGTTT

Function

GO:

id name namespace
GO:0006635 fatty acid beta-oxidation biological_process
GO:0005739 mitochondrion cellular_component
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups molecular_function
GO:0003985 acetyl-CoA C-acetyltransferase activity molecular_function
GO:0003988 acetyl-CoA C-acyltransferase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990714-22 Predicted to enable acetyl-CoA C-acetyltransferase activity. Predicted to be involved in fatty acid beta-oxidation. Predicted to be active in mitochondrion. Is expressed in central nervous system; hindbrain; liver; neurons; and yolk syncytial layer. Human ortholog(s) of this gene implicated in coronary artery disease. Orthologous to human ACAT2 (acetyl-CoA acetyltransferase 2).

Ensembl:

ensembl_id ENSDART00000146376

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036868 lncRNA downstream 14598 30902557 ~ 30911614 (-) True XLOC_018173
TCONS_00036867 lncRNA downstream 119738 30800868 ~ 30806474 (-) True XLOC_018171
TCONS_00036866 lncRNA downstream 460174 30465502 ~ 30466038 (-) True XLOC_018170
TCONS_00035808 lncRNA downstream 555285 30367154 ~ 30370927 (-) True XLOC_018164
TCONS_00036483 lncRNA downstream 668238 30253684 ~ 30257974 (-) True XLOC_018163
TCONS_00036869 lncRNA upstream 34737 30965883 ~ 30970932 (-) False XLOC_018176
TCONS_00036870 lncRNA upstream 34737 30965883 ~ 30970967 (-) False XLOC_018176
TCONS_00036871 lncRNA upstream 34737 30965883 ~ 30971242 (-) False XLOC_018176
TCONS_00036872 lncRNA upstream 34737 30965883 ~ 30972358 (-) False XLOC_018176
TCONS_00036873 lncRNA upstream 34737 30965883 ~ 30973173 (-) False XLOC_018176
TCONS_00035817 mRNA downstream 5856 30902138 ~ 30920356 (-) False XLOC_018173
TCONS_00035815 mRNA downstream 25178 30894093 ~ 30901034 (-) False XLOC_018172
TCONS_00035816 mRNA downstream 25265 30894824 ~ 30900947 (-) True XLOC_018172
TCONS_00035809 mRNA downstream 548991 30372352 ~ 30377221 (-) False XLOC_018165
TCONS_00035820 mRNA upstream 268 30931414 ~ 30938246 (-) False XLOC_018175
TCONS_00035821 mRNA upstream 3509 30934655 ~ 30938184 (-) True XLOC_018175
TCONS_00035822 mRNA upstream 71042 31002188 ~ 31067306 (-) False XLOC_018177
TCONS_00035823 mRNA upstream 76382 31007528 ~ 31018569 (-) True XLOC_018177
TCONS_00035825 mRNA upstream 141746 31072892 ~ 31075972 (-) True XLOC_018179
TCONS_00035814 other downstream 551306 30374686 ~ 30374906 (-) True XLOC_018169
TCONS_00035813 other downstream 552128 30373865 ~ 30374084 (-) True XLOC_018168
TCONS_00035812 other downstream 552785 30373207 ~ 30373427 (-) True XLOC_018167
TCONS_00035811 other downstream 553329 30372663 ~ 30372883 (-) True XLOC_018166
TCONS_00035788 other downstream 1430777 29495300 ~ 29495435 (-) True XLOC_018151
TCONS_00035824 other upstream 113929 31045075 ~ 31045205 (-) True XLOC_018178
TCONS_00035840 other upstream 1078864 32010010 ~ 32010999 (-) False XLOC_018186
TCONS_00035855 other upstream 1529129 32460275 ~ 32460391 (-) True XLOC_018195
TCONS_00035856 other upstream 1718697 32649843 ~ 32649959 (-) True XLOC_018196
TCONS_00035866 other upstream 2540075 33471221 ~ 33475485 (-) True XLOC_018202

Expression Profile

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