RNA id: TCONS_00036865


Basic Information

Item Value
RNA id TCONS_00036865
length 395
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id XLOC_018163
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 30123490 ~ 30258573 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTGTTTTCAAACAGCGCGTTTATGTCCTTCGCTGCCATTAACAGCGCCATCTGGCGTTTCGTATGAATGGATCACATTATAAAACGACGTTTTTCATCGTCGACTGTTTATCTTAACCTCGGAATAATTCGCGAAATTTGCACACGATTGAAGATTTAGCTTAGGAAATATTAAACTTCACGTAGCAGTCTAACTCGCTGTGCACAGGTTTGAACCTCAGCCTTTATGAAATAACGTGACATGGCAGTTTAACCTAAAGCTGACATCGCTCAACAGGGGCTGCTGGAGTGTCCTCCATCTGAGATCCAGGAAAGAGAGGCCATCCTCGCTCACCGGCTCTGTTCCCTTGTGTGAAATGAAAGatttgctGTGAAATCACTCCCCCTCAGGCCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036859 lncRNA downstream 11662 30146174 ~ 30201114 (-) False XLOC_018163
TCONS_00036481 lncRNA downstream 25592 30123501 ~ 30187184 (-) False XLOC_018163
TCONS_00036480 lncRNA downstream 113757 30092259 ~ 30099019 (-) True XLOC_018162
TCONS_00036479 lncRNA downstream 177466 30033558 ~ 30035310 (-) True XLOC_018161
TCONS_00036857 lncRNA downstream 279018 29927185 ~ 29933758 (-) True XLOC_018160
TCONS_00035808 lncRNA upstream 109155 30367154 ~ 30370927 (-) True XLOC_018164
TCONS_00036866 lncRNA upstream 207503 30465502 ~ 30466038 (-) True XLOC_018170
TCONS_00036867 lncRNA upstream 542869 30800868 ~ 30806474 (-) True XLOC_018171
TCONS_00036868 lncRNA upstream 644558 30902557 ~ 30911614 (-) True XLOC_018173
TCONS_00036869 lncRNA upstream 707884 30965883 ~ 30970932 (-) False XLOC_018176
TCONS_00035805 mRNA downstream 177450 30032628 ~ 30035326 (-) False XLOC_018161
TCONS_00035803 mRNA downstream 348246 29836276 ~ 29864530 (-) False XLOC_018159
TCONS_00035804 mRNA downstream 348386 29836278 ~ 29864390 (-) True XLOC_018159
TCONS_00035802 mRNA downstream 425566 29784930 ~ 29787210 (-) True XLOC_018157
TCONS_00035801 mRNA downstream 425584 29784927 ~ 29787192 (-) False XLOC_018157
TCONS_00035806 mRNA upstream 97437 30355436 ~ 30370884 (-) False XLOC_018164
TCONS_00035807 mRNA upstream 103154 30361153 ~ 30369598 (-) False XLOC_018164
TCONS_00035809 mRNA upstream 114353 30372352 ~ 30377221 (-) False XLOC_018165
TCONS_00035810 mRNA upstream 114354 30372353 ~ 30376433 (-) True XLOC_018165
TCONS_00035815 mRNA upstream 636094 30894093 ~ 30901034 (-) False XLOC_018172
TCONS_00035788 other downstream 717341 29495300 ~ 29495435 (-) True XLOC_018151
TCONS_00035770 other downstream 1162731 29047183 ~ 29050045 (-) True XLOC_018144
TCONS_00035760 other downstream 1336902 28871885 ~ 28875874 (-) False XLOC_018141
TCONS_00035753 other downstream 1370205 28832762 ~ 28842571 (-) False XLOC_018139
TCONS_00035747 other downstream 1600454 28611272 ~ 28612322 (-) True XLOC_018136
TCONS_00035811 other upstream 114664 30372663 ~ 30372883 (-) True XLOC_018166
TCONS_00035812 other upstream 115208 30373207 ~ 30373427 (-) True XLOC_018167
TCONS_00035813 other upstream 115866 30373865 ~ 30374084 (-) True XLOC_018168
TCONS_00035814 other upstream 116687 30374686 ~ 30374906 (-) True XLOC_018169
TCONS_00035824 other upstream 787076 31045075 ~ 31045205 (-) True XLOC_018178

Expression Profile

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