RNA id: TCONS_00036348


Basic Information

Item Value
RNA id TCONS_00036348
length 2453
RNA type mRNA
GC content 0.48
exon number 14
gene id XLOC_018522
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 54360268 ~ 54381034 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGAGTTTTGTGGTGTTTTAATTGACGCAGGAAAGTTTGCGAGTGAGTTTAGCGAGTTAGCGAGGTGTTGTTAGCAGCACATAAACAACTATAATAAGACTAAACCGCCGTGGAGAATAGTGTGAGATCAGCGCCGTTTACCGACAGAAACACGCAGAATAAAGTGTGAGATCAGCGCCGTTTACCGACAGAAACACGCAGAATAAAGTGTGAGATCAGCGCTGTTTACCGACAGAAACACGCAGAATAAAGTGTGAGATCAGCGCTGTTTACCGACAGAAACACGCAGAATGTGAGAGTTCAGCAAAGCCGCGAGTGCTGATTCTGCTGCGGTCAAAATCAACATGATCATCGGCATCTGGAGCCCAGCAGCTGCTGCCACACCAACCCTGCTGACGGAGAACACCACACCGAGCTGAGAtggtgatgaagatgatgatgttCTGGCTGCTGCCCGTCTGGACTCTCCTCCTGCTGTCCTcgtctgcttcttcttcttctcctccttcttcttctgctgctgctgaTTTCTCGGTGCGTTTTGGACACACTCTGCCATCTCTCAGCCGTcctgcaaactccactcagatcTTCTACGGCATCATGTTTGACGCTGGCAGCACCGGCACACGCATCCACGTCTACACCTTCATCCAGAGAGAGCCAGATGGACTGCCAGTACTGGACAATGAAATGTTCCACTCCATGAAGCCCGGACTCTCCGCATATGCAGACATGCCTGAGATTgcgggTCATACAGTGCGTCAGCTGCTGCGAGTGGCTAAGAAGACAGTTCCTCCACTGGAGTGGAAGCGGACGCCGCTGGTGTTCAGAGCCACCGCTGGACTCAGACTGCTGCCCGCCGCTAAAGCCCATGCACTGCTGGAGGAGGTCCAGGACGTCTTTGATGAGTCTCCGTTTTACGTTCCTCCAGACAGCGTCAGGATCATGAACGGCACCAGTGAAGGGATTTTGGCCTGGGTCACAGTCAACTTTCTGACAGGTCGACTGGAGCGAAACACAGAGAAGACAGTAGGAATCCTGGACCTCGGTGGAGGATCAACACAGATCACCTTCCTGCCCAAGTCAAAGAAAACCATTGAAGCTGCTCCGCCCGACTACATCAGCAGATTCCAGATGTTCAACTGCAGCTATCAGCTCtacacacacagTTATCTGGGAAACGGCATTAAAGCTGCGCGACTGTCAGCCCTCGGGGCCCTGAATGCAGACGGTCTGGAGAAAAAGCTCTTCCGCAGCTCTTGTTTGTCCAGATCACACACAGCAGAGTTCAGCTTCGGTGGCGTCTCGTATCACGTCAGCGGCGACATCAGCGgtgtgagGGGCTATAAGGCGTGCTATCAGGAGCTGGTGAAGGTGGTGAAGGGCATCATCAAGCAGCCGCTGGAGCTCAGGGATTCCTCCTCCTTCTACGCTTTCTCTTATTATTATGATCACGCGGTGGAGGCCGGACTCATCGATGAGCAGCGTGGAGGAGCCGTGAAGGTCCGAGACTTCAGGAAAACTGCTCGACAGGtgtgtaaCCGACCGGCCCGTCACACTCAGCTTAACCAGTTCCTCTGTATGGACCTGACCTACATCACCTGCCTGCTGAAAGACGGCTTCGGCTTCAAGGAGAGCACCGTCCTGCAGTTAACCAAGAAGGTGAGGAATGTGGAGACCAGCTGGGCTTTAGGCGCTGCCATCGACCACTTCCAGAAGTCCAGGATCCACTGAAGCAATCAATAATCACAATCAAATCCCACTCCACTCCTGAGCATCAGTGTTTACAGCAGCCTGATCTCCATGGCTGAGACTGCATTTTCACTCTTCTAGTTCAGTCTTTATTAAATGTACAGTTCTTATTTTTTTTGGAAACATTACAAGATATTACAGCACAGAGCACATCAGGACAACTTACATGACGTTTAGTCTAACAGTCCTGATGAATGCTAATTAAGATCTTGATTATTTATAGTTTTACATTGTCATTGACCAACTAAATCATAGTTTGGTGCAGTAACTCATAATAGTGCGGTGGGTGTAACAGATGAGGAAGAGTGTTTTATTTTCAACATGCCTCAGTCAGCTTGAGCTcaaatgtacaatatttatttcaCCAGCACACATCATGTCTTAAAGTGAACGattcatgtgtgtgaatgactcccccctaataataataataatataataaattgattttaaatcagtttaactgcgcagaatatttaaatgaataaattattgaaaCCTGTCTGCTGATGATTCTGATTGggtgaaatatgcttagccacgcccctccaactgtaaGTTTGCGGAGTTAAAGTGGAGCTGAAGAGTAAACCCCGCCCCTACTCTATTCAGTCGGAATTACTTTCAGTTgttaataaactatttttaataaacagcattttattgaCTGAAGCTGCACTGGGCTTCATCTTAAATCA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-88 Predicted to enable guanosine-diphosphatase activity and uridine-diphosphatase activity. Predicted to be involved in nucleoside diphosphate catabolic process. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in brain; heart; and liver. Orthologous to human ENTPD5 (ectonucleoside triphosphate diphosphohydrolase 5 (inactive)).

Ensembl:

ensembl_id ENSDART00000136779

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00037024 lncRNA downstream 14856 54339711 ~ 54345412 (-) True XLOC_018521
TCONS_00037022 lncRNA downstream 88813 54270891 ~ 54271455 (-) False XLOC_018520
TCONS_00037021 lncRNA downstream 88814 54270891 ~ 54271454 (-) False XLOC_018520
TCONS_00037023 lncRNA downstream 88828 54271075 ~ 54271440 (-) True XLOC_018520
TCONS_00037020 lncRNA downstream 123836 54219268 ~ 54236432 (-) False XLOC_018518
TCONS_00036529 lncRNA upstream 102731 54483765 ~ 54488224 (-) True XLOC_018525
TCONS_00037025 lncRNA upstream 205605 54586639 ~ 54591398 (-) False XLOC_018529
TCONS_00036530 lncRNA upstream 209077 54590111 ~ 54610803 (-) True XLOC_018529
TCONS_00037026 lncRNA upstream 381487 54762521 ~ 54772668 (-) True XLOC_018530
TCONS_00037027 lncRNA upstream 507423 54888457 ~ 54890490 (-) False XLOC_018533
TCONS_00036347 mRNA downstream 100488 54249339 ~ 54259780 (-) True XLOC_018519
TCONS_00036346 mRNA downstream 115012 54213688 ~ 54245256 (-) False XLOC_018518
TCONS_00036345 mRNA downstream 151924 54201459 ~ 54208344 (-) True XLOC_018517
TCONS_00036344 mRNA downstream 162138 54196543 ~ 54198130 (-) True XLOC_018516
TCONS_00036343 mRNA downstream 168138 54174978 ~ 54192130 (-) True XLOC_018515
TCONS_00036350 mRNA upstream 38558 54419592 ~ 54435287 (-) True XLOC_018523
TCONS_00036352 mRNA upstream 56019 54437053 ~ 54462551 (-) False XLOC_018524
TCONS_00036351 mRNA upstream 56019 54437053 ~ 54462551 (-) True XLOC_018524
TCONS_00036353 mRNA upstream 125394 54506428 ~ 54508650 (-) True XLOC_018526
TCONS_00036354 mRNA upstream 131033 54512067 ~ 54522660 (-) True XLOC_018527
TCONS_00036341 other downstream 325725 54013424 ~ 54034543 (-) True XLOC_018509
TCONS_00036338 other downstream 348225 53996170 ~ 54012043 (-) True XLOC_018508
TCONS_00036326 other downstream 924792 53408284 ~ 53435476 (-) False XLOC_018503
TCONS_00036327 other downstream 924875 53408579 ~ 53435393 (-) False XLOC_018503
TCONS_00036312 other downstream 1533142 52827010 ~ 52827126 (-) True XLOC_018493

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_09173596_09181048.mRNA True 1723 mRNA 0.50 13 CI01000029 9173205 ~ 9181141 (-)