RNA id: TCONS_00036529


Basic Information

Item Value
RNA id TCONS_00036529
length 2044
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id XLOC_018525
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 54483765 ~ 54488224 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgctcaaacacttaaacaaatgcttggttgtccagtgtaattgtgatgtccatgtcaaataaataaataaataaataaaataaaacgcccataatgatgctctaaactgagTGGAGGAGCAACTTCTGTAGAGCAGCACCCCATAATGTCTGTGcagattatattgttttacacacacacacatttaaaatacaatatctAATATTAGACTTGGTGAAAGCATGCACTCGCTCTCCAGATTAACTGGAATACATGTGAACAGCACATATAGagtctgtgtttcctttacacaTTATTGACAACATTACATATCCTATTCTACAACACCACATCACTTACAAAAGCCAACACTATTCTAATATCAGATATAAatcatatacatacataaacaatGAGGCCATTTATTaggaaattaaatgtaataattattatctATTAGAAATGAACTAAtcacactttaataataatattaataaattagatgtaacataaatgcATGCATGTGATTCACTGAAGCGTGCAGTACACAAACTGACATTACCGAATAAGCTGAGCCAAGATCATCAGTGtacaactcacacacacacacacacacacacactctgtgtcCTGTACACTCATACTGAGAACTGAATCAGTCAGTCAGCCTCCTGTACTCCTCCACCCAGATCAGCTCCAGTGTTTAAAATCCTCATTTCCTATAGATGACCTGCTTCAATGGTTTCTTTAAATCTGTGGCACACAACTAATAAACATGTTGGAAATATTGACAGCAGGGGCCTGTATGGTGGAAGTGCTAGAGTGTGTGGGGGTCTGTCATTGACTGAATTGTAATTGGAGCGATGTGctaaagaaagccccgcccacttatGAATATGCAGATTCAGCTGGAAGCGCAGCAGCTTACTTACTTCAGCAGCTTCCTGTTCATACAGATTCAGctttaatagtgttttattttgagctgtgtgtgttttatgtgcaGTCATGTGATCTgtctctcctctgtgtgtgtgtgtgtgtgcgtgcagctGTGCGTCCGGTGTCTCTCTCTCTGACCCCGAGAGCATCAGTATCGTCTCTGAGGAAGAGCTCCAGCTCCACACTGCCCTCCTCAGCCTCCTCCAGGAACTACAGCCCGTCCTCAACAGCAGcaaagagaactGCTGCTGGATCCTCCAGAGAGCCCCCGAACAGTAAAGCtaagagcagcagcagcaggaaaCCGCTGGAGAGCAAACCAAAAGATGGAGGTGCAGCTGCTGCAGATTTTCCTGAGGCCTCAGTGCAGAAGAAGGACTGGATCAACTGAGGTCTCCCCCTGTCCGGTCCTCAAGAGCCCCCTCAGATCCCCCAGTCAGTACTTCCAGATCTGCTACTGACTGATGACAAGTGTTCTGGAGGATGAAGAGCGCCTGACTCTGGAGCAGGACTACATCAGAACAgattcattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacgtgtgcatgcgtgtgtgtatgcgtgcgcgtgtgtgtgcacgtgtgcatgcgtgtgtgtgtgtgtgcctgtgtgtgtgtgtttgtttctgctgTGTTGTAGTTTAGAAGCTCCAGCATCAGGTGACTATTACCTGGGTCTATCataagagatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgctgagaGAGTGTTTTCTTCATGGACAGCTCCACGCTAAGAGGAGCTTTAGAGATATTAGTGATTTCTGCATGTAAAGCTGTTTAGTGGCTATAAACTGTATTTGTATCTAAGTCTGGCGGCTGTTTTGGATGACATGACAGGATTCAGACGTCCTCATTAAAGTACTGAATAGTGGATTAGTATGGGTCACACAATAATCATAGCGTAGTACCgttttgaatgtgtttgtgtgtattcatACATTAGACTGTGTTTTGATTATTTATCTTTCTCTAAGGAGCATAATTAAGATCCTCTATTTTTCACCATGATTTCTAGAATAAACAATCTAAAATGTCA

Function

GO:

id name namespace
GO:0022401 negative adaptation of signaling pathway biological_process
GO:0099643 signal release from synapse biological_process
GO:0006897 endocytosis biological_process
GO:0006898 receptor-mediated endocytosis biological_process
GO:0050877 nervous system process biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0045744 negative regulation of G protein-coupled receptor signaling pathway biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0043010 camera-type eye development biological_process
GO:0002029 desensitization of G protein-coupled receptor signaling pathway biological_process
GO:0002031 G protein-coupled receptor internalization biological_process
GO:0048791 calcium ion-regulated exocytosis of neurotransmitter biological_process
GO:0036368 cone photoresponse recovery biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0032940 secretion by cell biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0046903 secretion biological_process
GO:0015893 drug transport biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0031623 receptor internalization biological_process
GO:0043112 receptor metabolic process biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0048880 sensory system development biological_process
GO:0023058 adaptation of signaling pathway biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0003008 system process biological_process
GO:0006812 cation transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0001654 eye development biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0045055 regulated exocytosis biological_process
GO:0150063 visual system development biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0030141 secretory granule cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0031045 dense core granule cellular_component
GO:0045202 synapse cellular_component
GO:0012506 vesicle membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0000149 SNARE binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00037024 lncRNA downstream 138353 54339711 ~ 54345412 (-) True XLOC_018521
TCONS_00037022 lncRNA downstream 212310 54270891 ~ 54271455 (-) False XLOC_018520
TCONS_00037021 lncRNA downstream 212311 54270891 ~ 54271454 (-) False XLOC_018520
TCONS_00037023 lncRNA downstream 212325 54271075 ~ 54271440 (-) True XLOC_018520
TCONS_00036528 lncRNA downstream 247333 54228676 ~ 54236432 (-) True XLOC_018518
TCONS_00037025 lncRNA upstream 98415 54586639 ~ 54591398 (-) False XLOC_018529
TCONS_00036530 lncRNA upstream 101887 54590111 ~ 54610803 (-) True XLOC_018529
TCONS_00037026 lncRNA upstream 274297 54762521 ~ 54772668 (-) True XLOC_018530
TCONS_00037027 lncRNA upstream 400233 54888457 ~ 54890490 (-) False XLOC_018533
TCONS_00037028 lncRNA upstream 400233 54888457 ~ 54891115 (-) True XLOC_018533
TCONS_00036352 mRNA downstream 21214 54437053 ~ 54462551 (-) False XLOC_018524
TCONS_00036351 mRNA downstream 21214 54437053 ~ 54462551 (-) True XLOC_018524
TCONS_00036350 mRNA downstream 48478 54419592 ~ 54435287 (-) True XLOC_018523
TCONS_00036348 mRNA downstream 102731 54360268 ~ 54381034 (-) False XLOC_018522
TCONS_00036349 mRNA downstream 105832 54360984 ~ 54377933 (-) True XLOC_018522
TCONS_00036353 mRNA upstream 18204 54506428 ~ 54508650 (-) True XLOC_018526
TCONS_00036354 mRNA upstream 23843 54512067 ~ 54522660 (-) True XLOC_018527
TCONS_00036355 mRNA upstream 37180 54525404 ~ 54564018 (-) True XLOC_018528
TCONS_00036356 mRNA upstream 340874 54829098 ~ 54869006 (-) True XLOC_018531
TCONS_00036357 mRNA upstream 385897 54874121 ~ 54924593 (-) True XLOC_018532
TCONS_00036341 other downstream 449222 54013424 ~ 54034543 (-) True XLOC_018509
TCONS_00036338 other downstream 471722 53996170 ~ 54012043 (-) True XLOC_018508
TCONS_00036326 other downstream 1048289 53408284 ~ 53435476 (-) False XLOC_018503
TCONS_00036327 other downstream 1048372 53408579 ~ 53435393 (-) False XLOC_018503
TCONS_00036312 other downstream 1656639 52827010 ~ 52827126 (-) True XLOC_018493

Expression Profile

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