RNA id: TCONS_00039202


Basic Information

Item Value
RNA id TCONS_00039202
length 686
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id XLOC_019167
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 42663889 ~ 42677526 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTAACATCTTCTACATTCAACTTCATATGTAGGTAAACCAGCTTGAAGCTTATCACATTATCCAAAGGAGCAGCTGCCTGGAGGAATCAGATGTCCGAGTCCTGTCCAGGTGATTCCTCCAGCACCTGGGCCATGTCAGCAGAAGCGTCCGTCAGCCTGCGGGAAGCGGCACTGACCTCTTTTATGCGCAAGAGAGAGTTTTGAGCAGTCTGTTTGCCTGTTGTGTggactttttttctctttttcttcttttttctttccttttgaCAAGCCAAAGCATGTGCACTCATGCAGACAGCGATACAGACCAACTGGCTGCTTCTGAAATGCTTATGAATCTTCGCTGGAGACAAGAGCAGGAAGACTGCAGCCAGGTTTCATCAACACAATGTGTGACAATGCAAGTTGTTGAATCACCGGAGGAGCGGCACAAACCATTCTCGCTTGATCCCATAAGTGTCCAAACCTGCTCCTGGCTGTCCAACAGAGCTTAGTTTCTTCCCTAATTCACTGGAATCCATTGGAAACCCTTAGGCAAGAGTGTTGAGGCTTATTTGCAGGACAGTCATTTTCCATTCAACAAGAAGTCAAGGTGATTTTTCTCAATTACATTGCCTAAGTCATTGGACATTACATTTTTAACTGACACAAGCTGCAACTTGCACGGGATATCTCAAAACTCGAA

Function

GO:

id name namespace
GO:1905332 positive regulation of morphogenesis of an epithelium biological_process
GO:2000543 positive regulation of gastrulation biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039488 lncRNA upstream 519932 42150564 ~ 42154456 (+) True XLOC_019165
TCONS_00039484 lncRNA upstream 623961 42044041 ~ 42050427 (+) False XLOC_019164
TCONS_00037946 lncRNA downstream 99228 42776524 ~ 42777144 (+) True XLOC_019170
TCONS_00039492 lncRNA downstream 200492 42877788 ~ 42887367 (+) True XLOC_019172
TCONS_00037948 lncRNA downstream 214322 42891618 ~ 42967951 (+) False XLOC_019173
TCONS_00039493 lncRNA downstream 290459 42967755 ~ 42985641 (+) False XLOC_019173
TCONS_00037950 lncRNA downstream 290493 42967789 ~ 42985641 (+) False XLOC_019173
TCONS_00037940 mRNA upstream 300160 42226113 ~ 42374228 (+) True XLOC_019166
TCONS_00037938 mRNA upstream 812309 41839443 ~ 41862079 (+) False XLOC_019162
TCONS_00037937 mRNA upstream 812880 41837610 ~ 41861508 (+) False XLOC_019162
TCONS_00037939 mRNA upstream 826255 41840892 ~ 41848133 (+) True XLOC_019162
TCONS_00037936 mRNA upstream 896799 41743493 ~ 41777589 (+) True XLOC_019161
TCONS_00037942 mRNA downstream 31325 42708621 ~ 42715847 (+) False XLOC_019169
TCONS_00037943 mRNA downstream 36549 42713845 ~ 42715769 (+) True XLOC_019169
TCONS_00037944 mRNA downstream 40128 42717424 ~ 42778313 (+) False XLOC_019170
TCONS_00037945 mRNA downstream 40133 42717429 ~ 42780082 (+) False XLOC_019170
TCONS_00037949 mRNA downstream 253262 42930558 ~ 42964126 (+) False XLOC_019173
TCONS_00037941 other upstream 6354 42667915 ~ 42668034 (+) True XLOC_019168
TCONS_00037932 other upstream 1034330 41639979 ~ 41640058 (+) True XLOC_019160
TCONS_00037914 other upstream 2273376 40400938 ~ 40401012 (+) True XLOC_019145
TCONS_00037913 other upstream 2273600 40400714 ~ 40400788 (+) True XLOC_019144
TCONS_00037853 other upstream 4104987 38569285 ~ 38569401 (+) True XLOC_019097
TCONS_00037947 other downstream 163660 42840956 ~ 42841071 (+) True XLOC_019171
TCONS_00037951 other downstream 381952 43059248 ~ 43059365 (+) True XLOC_019174
TCONS_00037955 other downstream 501521 43178817 ~ 43206304 (+) False XLOC_019177
TCONS_00037972 other downstream 1024714 43702010 ~ 43710210 (+) False XLOC_019189
TCONS_00037974 other downstream 1028312 43705608 ~ 43705684 (+) True XLOC_019190

Expression Profile

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