RNA id: TCONS_00037942


Basic Information

Item Value
RNA id TCONS_00037942
length 1078
RNA type mRNA
GC content 0.39
exon number 5
gene id XLOC_019169
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 42708621 ~ 42715847 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCTGATGAAATCCTCCTTGATTTTCCTGGCATGTTTGTTTCTTGTGGATACTTCCCTTGATAAAGATAAGACCACTACAAAAAGAAAAGCTCAGAGGGAGGAAATGAAAATCACCCAACCTAATAAGAGTCTGACCTCAACTGGAAGAAGCAGAGAGGTCTTAAACCGGACTAAAGAAATCAAGACAAGAAACGACATGGGATGTACAAGCATAGGAGGCATCTGTCAACGAAATAGTTACATCTGTCAGGGCAGATACTTAAAGGATAAATGTCGGGGGGAGAAGTCACGCCAGTGTTGCATGCCAGTTTCAGCATGGAGTGCTCTGTGTGCTGGTAGTCATTATAACAGAGTACGAGCTTGTGACAGCTATGGTTGCGGTGGCTTTAACTCCAGAAGTGATTTGGGTCTCCACAAAGGAATTGATATCGTGTGTGATAATTATGGCATCATCAACGCGCCTTTTTCTGGAAACCTGGTTGGTCCTGTTGGGAGAGCAGTGGGAGAGTCTATTCAATACGATGGTGTCAAACTCTATAACAAAGTGCACTGTGTGAAGATCTTCAACATCCGATCATATAGTTACTTTGGGTTTGTTGTTCAAGGAGAGGCAATGGGTTACCTGTTACCCCTACAGGACACTTTCTCTGGCATTACCTCACACCTGGAGCTTCAGATGTGTGATGGGTCTGATCCCTCGCCCTTCATATGAGACTTGCTCATGGAAAATgaattcaaaatgctttttttttttttttttagaactacaGTGCATGGCTTCAAAATGTGCTTATGCATTAGTTTAAAAGCATGTTTTATCAGTGAAAAAGCACCACAAGATGGCAGCACAAATCTACAGAATAACAAGAAAACAAACATGatgataatttatattattaatattgtcagTTTTTAACCACCTCAAATACTCACACACTTTTTTGTATTTGGATGAAAAATAAAAGCCTCAGAGTACAAACTGCACATCATTTAGTTGTTGTGgttttttataatgttaatgAAAATGTCTTTGATTGGAAGACCAAAGTCTATGTTTTCTTTTATATGTTTGCAAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000158392

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039489 lncRNA upstream 31095 42663889 ~ 42677526 (+) False XLOC_019167
TCONS_00039490 lncRNA upstream 31095 42664072 ~ 42677526 (+) False XLOC_019167
TCONS_00039491 lncRNA upstream 31095 42664898 ~ 42677526 (+) False XLOC_019167
TCONS_00039202 lncRNA upstream 31325 42674388 ~ 42677296 (+) True XLOC_019167
TCONS_00039488 lncRNA upstream 554165 42150564 ~ 42154456 (+) True XLOC_019165
TCONS_00037946 lncRNA downstream 60677 42776524 ~ 42777144 (+) True XLOC_019170
TCONS_00039492 lncRNA downstream 161941 42877788 ~ 42887367 (+) True XLOC_019172
TCONS_00037948 lncRNA downstream 175771 42891618 ~ 42967951 (+) False XLOC_019173
TCONS_00039493 lncRNA downstream 251908 42967755 ~ 42985641 (+) False XLOC_019173
TCONS_00037950 lncRNA downstream 251942 42967789 ~ 42985641 (+) False XLOC_019173
TCONS_00037940 mRNA upstream 334393 42226113 ~ 42374228 (+) True XLOC_019166
TCONS_00037938 mRNA upstream 846542 41839443 ~ 41862079 (+) False XLOC_019162
TCONS_00037937 mRNA upstream 847113 41837610 ~ 41861508 (+) False XLOC_019162
TCONS_00037939 mRNA upstream 860488 41840892 ~ 41848133 (+) True XLOC_019162
TCONS_00037935 mRNA upstream 930867 41697552 ~ 41777754 (+) False XLOC_019161
TCONS_00037944 mRNA downstream 1577 42717424 ~ 42778313 (+) False XLOC_019170
TCONS_00037945 mRNA downstream 1582 42717429 ~ 42780082 (+) False XLOC_019170
TCONS_00037949 mRNA downstream 214711 42930558 ~ 42964126 (+) False XLOC_019173
TCONS_00037952 mRNA downstream 455166 43171013 ~ 43173766 (+) False XLOC_019176
TCONS_00037953 mRNA downstream 456659 43172506 ~ 43177239 (+) False XLOC_019176
TCONS_00037941 other upstream 40587 42667915 ~ 42668034 (+) True XLOC_019168
TCONS_00037932 other upstream 1068563 41639979 ~ 41640058 (+) True XLOC_019160
TCONS_00037914 other upstream 2307609 40400938 ~ 40401012 (+) True XLOC_019145
TCONS_00037913 other upstream 2307833 40400714 ~ 40400788 (+) True XLOC_019144
TCONS_00037853 other upstream 4139220 38569285 ~ 38569401 (+) True XLOC_019097
TCONS_00037947 other downstream 125109 42840956 ~ 42841071 (+) True XLOC_019171
TCONS_00037951 other downstream 343401 43059248 ~ 43059365 (+) True XLOC_019174
TCONS_00037955 other downstream 462970 43178817 ~ 43206304 (+) False XLOC_019177
TCONS_00037972 other downstream 986163 43702010 ~ 43710210 (+) False XLOC_019189
TCONS_00037974 other downstream 989761 43705608 ~ 43705684 (+) True XLOC_019190

Expression Profile

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