Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00037946 |
| length | 535 |
| lncRNA type | retained_intron |
| GC content | 0.45 |
| exon number | 2 |
| gene id | XLOC_019170 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007132.7 |
| NCBI id | CM002905.2 |
| chromosome length | 45934066 |
| location | 42717424 ~ 42780082 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0071800 | podosome assembly | biological_process |
| GO:0060348 | bone development | biological_process |
| GO:0007507 | heart development | biological_process |
| GO:0006801 | superoxide metabolic process | biological_process |
| GO:0001654 | eye development | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0070273 | phosphatidylinositol-4-phosphate binding | molecular_function |
| GO:0016175 | superoxide-generating NAD(P)H oxidase activity | molecular_function |
| GO:0016176 | superoxide-generating NADPH oxidase activator activity | molecular_function |
| GO:0035091 | phosphatidylinositol binding | molecular_function |
| GO:0080025 | phosphatidylinositol-3,5-bisphosphate binding | molecular_function |
| GO:0032266 | phosphatidylinositol-3-phosphate binding | molecular_function |
| GO:0010314 | phosphatidylinositol-5-phosphate binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060810-52 | Predicted to enable superoxide-generating NADPH oxidase activator activity. Predicted to be involved in superoxide anion generation. Predicted to act upstream of or within animal organ development and podosome assembly. Predicted to be located in cell projection and podosome. Predicted to be active in cytoplasm. Is expressed in several structures, including central nervous system; notochord; otic vesicle; segmental plate; and tail bud. Human ortholog(s) of this gene implicated in Frank-Ter Haar syndrome. Orthologous to human SH3PXD2B (SH3 and PX domains 2B). |
| ensembl_id | ENSDART00000160502 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00039489 | lncRNA | upstream | 98998 | 42663889 ~ 42677526 (+) | False | XLOC_019167 |
| TCONS_00039490 | lncRNA | upstream | 98998 | 42664072 ~ 42677526 (+) | False | XLOC_019167 |
| TCONS_00039491 | lncRNA | upstream | 98998 | 42664898 ~ 42677526 (+) | False | XLOC_019167 |
| TCONS_00039202 | lncRNA | upstream | 99228 | 42674388 ~ 42677296 (+) | True | XLOC_019167 |
| TCONS_00039488 | lncRNA | upstream | 622068 | 42150564 ~ 42154456 (+) | True | XLOC_019165 |
| TCONS_00039492 | lncRNA | downstream | 100644 | 42877788 ~ 42887367 (+) | True | XLOC_019172 |
| TCONS_00037948 | lncRNA | downstream | 114474 | 42891618 ~ 42967951 (+) | False | XLOC_019173 |
| TCONS_00039493 | lncRNA | downstream | 190611 | 42967755 ~ 42985641 (+) | False | XLOC_019173 |
| TCONS_00037950 | lncRNA | downstream | 190645 | 42967789 ~ 42985641 (+) | False | XLOC_019173 |
| TCONS_00039494 | lncRNA | downstream | 194785 | 42971929 ~ 42985641 (+) | True | XLOC_019173 |
| TCONS_00037942 | mRNA | upstream | 60677 | 42708621 ~ 42715847 (+) | False | XLOC_019169 |
| TCONS_00037943 | mRNA | upstream | 60755 | 42713845 ~ 42715769 (+) | True | XLOC_019169 |
| TCONS_00037940 | mRNA | upstream | 402296 | 42226113 ~ 42374228 (+) | True | XLOC_019166 |
| TCONS_00037938 | mRNA | upstream | 914445 | 41839443 ~ 41862079 (+) | False | XLOC_019162 |
| TCONS_00037937 | mRNA | upstream | 915016 | 41837610 ~ 41861508 (+) | False | XLOC_019162 |
| TCONS_00037949 | mRNA | downstream | 153414 | 42930558 ~ 42964126 (+) | False | XLOC_019173 |
| TCONS_00037952 | mRNA | downstream | 393869 | 43171013 ~ 43173766 (+) | False | XLOC_019176 |
| TCONS_00037953 | mRNA | downstream | 395362 | 43172506 ~ 43177239 (+) | False | XLOC_019176 |
| TCONS_00037956 | mRNA | downstream | 401687 | 43178831 ~ 43214010 (+) | False | XLOC_019177 |
| TCONS_00037957 | mRNA | downstream | 416479 | 43193623 ~ 43272711 (+) | True | XLOC_019178 |
| TCONS_00037941 | other | upstream | 108490 | 42667915 ~ 42668034 (+) | True | XLOC_019168 |
| TCONS_00037932 | other | upstream | 1136466 | 41639979 ~ 41640058 (+) | True | XLOC_019160 |
| TCONS_00037914 | other | upstream | 2375512 | 40400938 ~ 40401012 (+) | True | XLOC_019145 |
| TCONS_00037913 | other | upstream | 2375736 | 40400714 ~ 40400788 (+) | True | XLOC_019144 |
| TCONS_00037853 | other | upstream | 4207123 | 38569285 ~ 38569401 (+) | True | XLOC_019097 |
| TCONS_00037947 | other | downstream | 63812 | 42840956 ~ 42841071 (+) | True | XLOC_019171 |
| TCONS_00037951 | other | downstream | 282104 | 43059248 ~ 43059365 (+) | True | XLOC_019174 |
| TCONS_00037955 | other | downstream | 401673 | 43178817 ~ 43206304 (+) | False | XLOC_019177 |
| TCONS_00037972 | other | downstream | 924866 | 43702010 ~ 43710210 (+) | False | XLOC_019189 |
| TCONS_00037974 | other | downstream | 928464 | 43705608 ~ 43705684 (+) | True | XLOC_019190 |
