RNA id: TCONS_00005830


Basic Information

Item Value
RNA id TCONS_00005830
length 6308
lncRNA type sense_over
GC content 0.37
exon number 3
gene id XLOC_001935
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 9595575 ~ 9661896 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACAACTCCACCTCAGGTAACTCTTgatgtcagccaatcagaacttgGTCCAAGCCAGGAAAACAATTTCCCATGTTCCCTAATTCTGTACAAAAGTAACGGTTTTCACTAGTTTTTAGCACACTGAGGGAACTATAATCTACGGTATTATGACTATATAGCGGAATCTTCCAATATATATCACGAAGACCATGGTGCTTGGAATCTGTAGTTCTtgcattattgttaatattaccGCAGTGTTAGCCACTGAAATGTTATGTGCATGAATTGTTTGTTGGGGATCATTGTTTGAAACAGTCATTCATTGACcgttgtttaaatgtgtttgtgtgtgtatgtgtgtatggattGTGGTAGATGTCTAATATCTCTAAGAGACATTTTACAGGCAGTCAGTCAAAACGTGTTTTCTTCACAAACTAAAGTGAAACAGttcgttaaaaaatgaaaattctttacTTTAGTCATTCCAAACTTATGATCCTGTGAAGTGGCCCAATGTGCCATTTCCAAACGTTATGAAGTTCTTTGTGAGGAATTTAAGTCAAGACCCTAAAAATCTTTCATTGTAGCTGTGAAATCTGTTGTGTTCATCTGTTCAAATTCAGATGTTTATTATCAAAAACTCATCAAAACTTATTGCATCAATTTTGTTGTCATTACTTATTTAGTCATACTCCAcgtgttccaaacctgtttgagttccaTTCTTCTGTTGTGCACAAAGAAAGATCTACTCAATTCTTGGGGAAAATAAGCCAGCCTTTGACTTGAGTAAAGGgaaagaatattcatttttgagtgaatcgTCCTTTTAAGTTAAGACTCAAAAGTGAAACAAGTGTTGAGTTGGGACAGAGACCAGTCGAGACTAAGACGTTCTGAGACACAATTTTTGAGTCAAGAATGTGACCAGAAGAGAGACTTGTTTTGAGTCAAGATAACCAGCATATGCATCAGGCTAAAGCAGTGGTTTTAAACCATctgccacattctgtctttatattttgCACTCAAAAGTGCTGTGAGTGATGGCATTTTGGATTTTGTCTTTCCAATGTAGTGGTTCTTGTAAAACACTTCTCAAAATACCTTAAATGGAtacggaaaaaaaaaatcaaactcgTTATAAAAAGTTAGATAAATTAAAGTTTCTGAGGCAAAATACGATTTACATAACATAAGGTTGAATATTGCAGTTTATTATTGAATAGTGCAATAAACTTTAGACAAGACATTTTGACTAGTCTTGAGTGATAACAAATACCGGATGAGTCTTAAGGTGCATCCCAGATGATTTATATTGCCCTCCAAAGGGCACTTCATAGTGAAAAAAAACAAGGCCGCCATTATGAGGTTTCATTTCAAACTGAAAATGATCAAACCTGGAATAATGTTTTCAGAGGGACCCTCCATATGATGAACCTTTCACAATGGAAGCCCCTCTCAGTCAAGACCAAGATCAGAAGAGGGACTTGTCTTGAGTCAAGACAACCAGCATACACATTAGGATAAAGCAATGGTTTTCAACCATCTgacacattctgtctttatattttgCACTCAAAAGTGCTGTAAGTGATGGCATTTTGGATTTTGTCATTTCAATTTAGTGGTTCTTGTCAAAACACTTCTCAAAATGCTCTCTACGGATATGAAAAACTAAAAATCAAACCATTTCTGACTATTTTGGACTGTTTTGTGTGCAATGAACTTTAGACAAGAAGTTTTGACTAGTCTTGAGTCATAACAAAGACTGGATGAGTCTTAAGGTGCATCCCAGATGATTTATATTGCCCTCCAAAGGGCACTTCATAGTGAAAAAAAACAAGGCCGCCATTATGAAGTTTCATTTCAAACTGAAAATGATCAAACCTGGAATAATGTTTTCAGAGGGACCCTCCATATGATGAACCTTTCACAATGGAAGCCCCTCTCAGTCAAGACCAAGATCAGAAGAGGGACTTGTCTTGAGTCAAGACAACCAGCATACACATTAGGATAAAGCAATGGTTTTCAACCATCTgacacattctgtctttatattttgCACTCAAAAGTGCTGTAAGTGATGGCATTTTGGATTTTGTCATTTCAATTTAGTGGTTCTTGTCAAAACACTTCTCAAAATGCTCTCTACGGATATGAAAAACTAAAAATCAAACCATTTCTGACTATTTTGGACTGTTTTGTGTGCAATGAACTTTAGACAAGAAGTTTTGACTAGTCTTGAGTCATAACAAAGACTGGATGAGTCTTAAGGTGCATTCTTGACGAGATCTATTGCCCTTCAAAGggcaataaatgtaataaaatcaaGGCAGCCATATTGAAGTTTAATTTCAAACCGAAATGGTCAAAACTGGCCTAATCCCttgggctgggcaattaatcgaaaagtaatcaaaatcgactttcagaacctataatcaatcaaatttttcaaggacgattttttcaattactttccctacgtgGCCCACTTTGTTAAAGGTtgtggctgatttatacttctgcggccACTTTGCaaccacatctgatctctggtcaagtaggacgatgAATTCATTCTTGAGCCTtgctttgcactacattgacgatgattggaagctgcgccagagatgcctgTAGACGGCATATCAAATTTGTCAGTAAACtatgaggacaaaaaaaaaattccataaataaataaaataatcgtttgtTAATCGTAACTGagtaaaaatgttcaattaatcaagattttgattttaggctaaATCGCTCATCCCTAGATGAACCCTTCACAATGGAATCCCCCCTCAGTCAAGACCAAGATCAGAATAGGGACTAGTCTGAGTCAACACAGAATTCAGAAGTAGAGTCAGAGTCAAGATAAAGGCTAGAATGCATAGAAAATGAGTCCAGACAAAGATCAGAAGAGAGATAAATCTTAAGTTAGGACTATCTCTAAAACAGAGATGCTTCTTCAAGACCAAGAACTGAAAAAAGACGAGAATGAGTTTCAAAAGAGATGAGTTATTCTTAGTCGAGACTTAGTGAGATTAAGAAAAAGTCTTGAGTCAAGACCGACACCAGAAGAGGGCCTAGtccagacaaataaataaaattaaataaataaataaataagtaaaattcaAGTCAAGACAAAAGACAACAAAGTATGAAAGTGATCATGTTCTTGCACTAACTTCATTCTTAAGTTCTACAACACCAAATTTTGGTcagttttaattttcattttttggtgaactgttttGTTACAGCTACAATCAACAAGCATCAAAACAGAATTTCACTTTGGTCTTGCTTGAGGATGTGGTATTGTTTAGTGTTTATGAAACACTGATCATAGTGACAGTTCCCATTTGTTGTTTACAGTGGTCAAAAGGTCACCTCAGTTTTCATTGCTTCTGTTTATTTCTGTAGCTTTCTTTTCAGGAATTAAACTAAGGCCccatcccaattctatttttgtacccctaccccttccccttggctctTGAAACGTGAAGGAAAGGTCTTCAAAATTTACCCAAAGAAATGGTGTACAGCCATGTATTCTGGGAGattttcgtaccccttggtttcgagtgtggtcctgaaaaatctctgttttaaGGGGTATCTAGCTCTTCCTCTTAGCCCTAAACTTcaaactaaagagaattgggacaccccaacCCTTTTATATGAATGCGCAAAACGAGAGGTAcagtaggggtaaggggaaggactAACGGGGAGAATTGGGATTGCTtgcctaagtttttttttttcaagattgcctaagttttgtttatttttccctcccAAAATTCCCGTTTTCccttattttattacaaaacattGCTAACTTCCATGAAGTTGTAACTGAAATATTTTATATCAGATTTTAGTTTTATCAACCCTATAGAATCCATTACAGGTTTACCAGGATTATTTCCTGCTTGATTAACATGCTATAATTAAATAGAGAGGAAAACATCACAATAACACACAGATGTCTGGTGTTTTAATGTAGTTTTGTGCAAACTCAGTGTAACAGAATAAACGGTCCTATTTCAAATAACATTTAGATGGTTCAGTGTTTAAAGTAATGGCaggaatatttttgttttgtttatttttcatcagTGGCTgatttgtccttttgttaattgtattttcagACCAGTTAAGTGTGTATTGGTTTTGGTGATTTACGAGGACATAAATGAGTCTGACCTTGGTAGTACAGTGTTGGTTTATAAGAACATGCCTTGTGTCCtcaattaaaaactgtttataatcaaatgtgtttttcacattcaacatttgagggttgggtttagttgTAGGATGAGGCCATATAATAAGccgtttttacagtataaaatacattgagtcctcataaaccaccaacactagtgtgtgtttgtatttgtgtatgGAAGTCTTTATGATATGAAGTTCTAAATATGAATGCTTTGTCACTTAAGACtgttaatcatgtttttttttatggtggTATAATTGTTTTTCCACTTAAATGAGTAATGTGAAGTGAAATCTTCCTGGTCTTTGTTTAAGCGCCATCTTGCTAAATCTTATTTTGCCTCCTGCGAGTGTTTTTCGACAGGGGATGTTACAGCAGCACCTTCCAGCAAAGACATTTTTTATGAAATGCTTTCGAgcaaaatgtgttcattttttttctgtccTAGCGTGTGAAATCGCAACACCTTCTTGATATGTTTTTACATGTAGAGAATTTCTTCCTTATTTGTGGTTCACTTTTTTTACTATTAGTTTGGCCTCAGCTGATATAAGAGGTTACAACTGTTGGAGCTGGGTTGGTAACAATGAGAGTTTATCTACATTTTCTCACTAGCTGTCAAATTGCCttcaaaataaatgtcatttgtttccttttttgcTCATTTTGACGCAGCAAAGCCTTATTAGTACATGTTTGACTCGTTTATCTGCCCAGCTCAGCCCTGTATCATGCATGCTGCCTTTGGCAAAGATATTCTTTGGCAAAGGAAGTATGATTGTGTAGTTGTGTCACACAACACCCAGCGCTGTGAGTGTCCTGCACTGTATCTCGCATTTTTACTCACTTCCTATAGCACTTACTGTCTGCTCTTATGGATTTCTATCAGGATTTTATATCCATAATTCTTTCTTTTTCCCTtggaaatgtcagttttgtttgcatttgaattttaaaaatttaCTTGGCTGTTATAATTGGACGGGACGTGTTTGGTTGTGATGATGCTTGTTTCTGTCCTGTGCGCAACTGCAAAAAACGAACTGATGTGTTGGATATTTTTACGTCTGTATTAGACATTTTATTTGCAAATCTATTGTTCGATTCAATTGTAAATGAATAGAAGATGGGCATCCGTCATTTTATACAACCAGAGCCATCATTTGATGgacatactgcacatttttatgATATATAATCAGAGATATGAGGCTATTTATGACCACAGAGAGAACGATTCTTAAAGTCAGGAACTAATATCTTTTGATGAAATAAtagtagaaattatttattttgcattttgtttctttttaaacacCACCGGGCAAAGATATCCCTTTTGCTTGTGGCAATGCAAGGAAGAATATATAGAAATGTAGCCAACGCACAGTCAATTCTTACCGTTTGGGTTTGTTTGTATGTTATTGCTTTTGTATCTTGGCTAAGCTTTGCTCTGACATGTAGGGCAAGCTTGTGAGATGAATCTAAAGGTCATGACATGTAGTTGCATGCCAAGATAATAAACACAGTTACATCATCACTTGAGTGTTCAGACTCTTTTTATCCTGAGGAtgcaatttttttgtgaataagcATGACATCTGCTGGTGCACTGTGGTATAACGTGGCTGTGGACTACTTTGCTGCATTTTACTTACTTTGAAGACCTTAAAatgtgatttctgcataataggtgccttttaaacaGACCATATGCTTTCAGTAGATCAATCGGAATATAATCAAGCTGTAAGATACTTGTCACGATGGCACAGtgaacagcaagaaggtcgctggtttgagcctcggctgggtcagttggcatttctctgtggagtttgcatgttctccctgtgtcggtgtgggtttcctccaggtgctctggtttcgccCACTattccaaagacatttggtataggtaaattgggaaggcgtgtagtgtgtgaatgagtgtgcatgggtgtttcccagggatgggttgcagctagaagggcatcgtaaaacataagttggttaagctggtggttcattctgctgtggcgaccct

Function

GO:

id name namespace
GO:0010608 posttranscriptional regulation of gene expression biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0043488 regulation of mRNA stability biological_process
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay biological_process
GO:0010494 cytoplasmic stress granule cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0035613 RNA stem-loop binding molecular_function
GO:0003725 double-stranded RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005829 lncRNA upstream 520640 9122393 ~ 9125863 (+) True XLOC_001926
TCONS_00005681 lncRNA upstream 872844 8773436 ~ 8773659 (+) True XLOC_001919
TCONS_00005828 lncRNA upstream 930755 8709485 ~ 8715748 (+) True XLOC_001917
TCONS_00005680 lncRNA upstream 995648 8646959 ~ 8650855 (+) True XLOC_001913
TCONS_00003761 lncRNA upstream 1237628 8402096 ~ 8408875 (+) True XLOC_001907
TCONS_00005831 lncRNA downstream 161301 9823197 ~ 9835446 (+) True XLOC_001938
TCONS_00005685 lncRNA downstream 228795 9890691 ~ 9895543 (+) True XLOC_001939
TCONS_00003804 lncRNA downstream 516205 10178101 ~ 10195602 (+) False XLOC_001941
TCONS_00005686 lncRNA downstream 516272 10178168 ~ 10187258 (+) True XLOC_001941
TCONS_00005687 lncRNA downstream 626252 10288148 ~ 10295748 (+) False XLOC_001943
TCONS_00003800 mRNA upstream 1784 9601587 ~ 9644719 (+) False XLOC_001935
TCONS_00003796 mRNA upstream 75491 9553935 ~ 9571012 (+) False XLOC_001934
TCONS_00003795 mRNA upstream 75796 9550419 ~ 9570707 (+) False XLOC_001934
TCONS_00003797 mRNA upstream 80829 9561066 ~ 9565674 (+) True XLOC_001934
TCONS_00003794 mRNA upstream 226509 9410304 ~ 9419994 (+) True XLOC_001933
TCONS_00003801 mRNA downstream 35201 9697097 ~ 9810597 (+) True XLOC_001936
TCONS_00003805 mRNA downstream 548559 10210455 ~ 10274162 (+) True XLOC_001942
TCONS_00003806 mRNA downstream 651128 10313024 ~ 10326025 (+) False XLOC_001944
TCONS_00003807 mRNA downstream 651148 10313044 ~ 10325944 (+) True XLOC_001944
TCONS_00003808 mRNA downstream 689789 10351685 ~ 10380131 (+) True XLOC_001945
TCONS_00003791 other upstream 297997 9346396 ~ 9348506 (+) False XLOC_001931
TCONS_00003779 other upstream 766377 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003778 other upstream 777608 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003759 other upstream 1303198 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003739 other upstream 2068452 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003802 other downstream 63878 9725774 ~ 9725891 (+) True XLOC_001937
TCONS_00003803 other downstream 251167 9913063 ~ 9913177 (+) True XLOC_001940
TCONS_00003821 other downstream 1139809 10801705 ~ 10803356 (+) False XLOC_001951
TCONS_00003825 other downstream 1160859 10822755 ~ 10823448 (+) True XLOC_001951
TCONS_00003827 other downstream 1310914 10972810 ~ 10987302 (+) False XLOC_001952

Expression Profile

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