RNA id: TCONS_00038704


Basic Information

Item Value
RNA id TCONS_00038704
length 367
lncRNA type antisense
GC content 0.39
exon number 2
gene id XLOC_019658
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 27558490 ~ 27566738 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAATGAATAAGAAGTGATGCCTTCAGACTTCAAGTGTGAAGCATGTCAGATTGTATTGTCTGTAAATGTCCTCTTTATTAATTTTTCTGTTCAATGACAACTTTCACATTCCTCCTCAGCCAATAGTGTGAGTTTGTGGCATGGCTAGTGTACGAGGCAGGCTGAGCCAAAACATGCAGCTCAAGCCAAAAAATTGCAGATTTGCCAAAACATGATCCGAACAGTGGGAGAAAACAATGATGTTCTTACAAGATGAAGGAATTTGATGACATGCTGGGTTAAGAGCTGAACTTGAGTTTCTTCTTAAAACGCTTACATCAAGAATGAAGATGATACCTACCATATTGAAGAAACATAGACACCAAGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000155316

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00038697 lncRNA downstream 114885 27441725 ~ 27443605 (-) True XLOC_019656
TCONS_00038695 lncRNA downstream 145220 27407482 ~ 27413270 (-) True XLOC_019655
TCONS_00038687 lncRNA downstream 349865 27204901 ~ 27208625 (-) False XLOC_019652
TCONS_00039656 lncRNA downstream 367056 27188124 ~ 27191434 (-) True XLOC_019649
TCONS_00038678 lncRNA downstream 547701 27002609 ~ 27010789 (-) True XLOC_019647
TCONS_00038712 lncRNA upstream 579242 28145980 ~ 28234944 (-) True XLOC_019660
TCONS_00039657 lncRNA upstream 796736 28363474 ~ 28363814 (-) True XLOC_019663
TCONS_00039658 lncRNA upstream 836232 28402970 ~ 28411915 (-) True XLOC_019664
TCONS_00039245 lncRNA upstream 926339 28493077 ~ 28500621 (-) False XLOC_019666
TCONS_00038715 lncRNA upstream 926339 28493077 ~ 28502262 (-) False XLOC_019666
TCONS_00038702 mRNA downstream 50704 27482318 ~ 27507786 (-) False XLOC_019657
TCONS_00038701 mRNA downstream 50704 27482318 ~ 27507786 (-) False XLOC_019657
TCONS_00038700 mRNA downstream 50704 27482318 ~ 27507786 (-) False XLOC_019657
TCONS_00038699 mRNA downstream 50704 27482318 ~ 27507786 (-) False XLOC_019657
TCONS_00038696 mRNA downstream 114495 27437867 ~ 27443995 (-) False XLOC_019656
TCONS_00038705 mRNA upstream 9020 27575758 ~ 27619701 (-) False XLOC_019659
TCONS_00038706 mRNA upstream 11641 27578379 ~ 27619701 (-) True XLOC_019659
TCONS_00038707 mRNA upstream 69550 27636288 ~ 27881752 (-) False XLOC_019660
TCONS_00038708 mRNA upstream 69550 27636288 ~ 28340977 (-) False XLOC_019660
TCONS_00038709 mRNA upstream 70781 27637519 ~ 28235361 (-) False XLOC_019660
TCONS_00038703 other downstream 69529 27484091 ~ 27488961 (-) True XLOC_019657
TCONS_00038698 other downstream 75452 27482149 ~ 27483038 (-) False XLOC_019657
TCONS_00038689 other downstream 337186 27204999 ~ 27221304 (-) False XLOC_019652
TCONS_00038674 other downstream 639587 26917928 ~ 26918903 (-) True XLOC_019646
TCONS_00038671 other downstream 856536 26701821 ~ 26701954 (-) True XLOC_019643
TCONS_00038710 other upstream 379536 27946274 ~ 27946391 (-) True XLOC_019661
TCONS_00038711 other upstream 496468 28063206 ~ 28063322 (-) True XLOC_019662
TCONS_00038723 other upstream 1217089 28783827 ~ 28783944 (-) True XLOC_019671
TCONS_00038726 other upstream 1379277 28946015 ~ 28950927 (-) False XLOC_019673
TCONS_00038727 other upstream 1379277 28946015 ~ 28952986 (-) False XLOC_019673

Expression Profile

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