RNA id: TCONS_00039658


Basic Information

Item Value
RNA id TCONS_00039658
length 887
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_019664
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 28402970 ~ 28411915 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGCTCTGTGTGCCtacagttaaaaaaaaccttAACCCTTGTTTTCTGTGTGATCTGCTCTTAGGAGTACTattggcagtggaaacacaagcctgatctGGGTGACCTGTACCGAATCATACTGCACTAAACTAAACTGTACCGTACCGCTTAGTGAAAACAAGGCTTGTCCCCTTCCTACATTACAAGAGGAACAACATCTGAACAAATcATGATTCCGTCCTTCACCGGCTCCTTTGCTTCGCCACTGCCATCTTCGAGAGCTGCTTATTTGCGAGGGAATCTTCCTAATGACATCAGATTCTGCTGTAACATCAGCCATGTCCAGATAAGTCTCTCTTTTTTGTGTTCATTCAGTCATTGACCTTCATGAACGCAAATGAGTTGATATCTGTGATGGCAATTGCGTTATGATAAAAGCGAAAGGCCTTGATTGAGGTCAGAGGAGGGAATGAAAATGTAAGAGTTGCTGAGATGAAGACGAGCCTGTCAGAAAAGATAGTCGGAGCTTTATGTCATGCTCCATTCTGGGCCAGTCACTTCACTGACATTGAAAAGAAGTCATCATTACGGGGCCAATTGTAATTTGTACTATCCTCATCTGAACCGCTCTGTACACAGACCTTTCGCTTTGCTTAGGAAAACAGAGTTAATGCTGAAATACACTTATTGATGCTGCCGGGAAACCAGTGAGGTGGATATAATGTAGCATGTCCTTCTCACAGTGTTAAAGGTCACCCAAGTGACCTTTATGTGTATTATTTGTCTTTTGCTGGAAAATTAAAGCTGTGACCTATTAATGTACACAGAGAAAGTCAGATTATTGACTTAATGGACTTTTGTATGATCAATTGAAAGCAGGATTTAAGATTCATGATATGTGTTGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039657 lncRNA downstream 39156 28363474 ~ 28363814 (-) True XLOC_019663
TCONS_00038712 lncRNA downstream 168026 28145980 ~ 28234944 (-) True XLOC_019660
TCONS_00038704 lncRNA downstream 836232 27558490 ~ 27566738 (-) True XLOC_019658
TCONS_00038697 lncRNA downstream 959365 27441725 ~ 27443605 (-) True XLOC_019656
TCONS_00038695 lncRNA downstream 989700 27407482 ~ 27413270 (-) True XLOC_019655
TCONS_00039245 lncRNA upstream 81162 28493077 ~ 28500621 (-) False XLOC_019666
TCONS_00038715 lncRNA upstream 81162 28493077 ~ 28502262 (-) False XLOC_019666
TCONS_00038716 lncRNA upstream 81162 28493077 ~ 28502354 (-) False XLOC_019666
TCONS_00039246 lncRNA upstream 81411 28493326 ~ 28502354 (-) False XLOC_019666
TCONS_00039248 lncRNA upstream 88123 28500038 ~ 28502314 (-) False XLOC_019666
TCONS_00038708 mRNA downstream 61993 27636288 ~ 28340977 (-) False XLOC_019660
TCONS_00038709 mRNA downstream 167609 27637519 ~ 28235361 (-) False XLOC_019660
TCONS_00038707 mRNA downstream 521218 27636288 ~ 27881752 (-) False XLOC_019660
TCONS_00038705 mRNA downstream 783269 27575758 ~ 27619701 (-) False XLOC_019659
TCONS_00038706 mRNA downstream 783269 27578379 ~ 27619701 (-) True XLOC_019659
TCONS_00038713 mRNA upstream 3973 28415888 ~ 28439596 (-) False XLOC_019665
TCONS_00038714 mRNA upstream 6238 28418153 ~ 28439596 (-) True XLOC_019665
TCONS_00038717 mRNA upstream 101142 28513057 ~ 28523548 (-) False XLOC_019667
TCONS_00038719 mRNA upstream 142801 28554716 ~ 28737320 (-) False XLOC_019669
TCONS_00038720 mRNA upstream 143265 28555180 ~ 28640316 (-) False XLOC_019669
TCONS_00038711 other downstream 339648 28063206 ~ 28063322 (-) True XLOC_019662
TCONS_00038710 other downstream 456579 27946274 ~ 27946391 (-) True XLOC_019661
TCONS_00038703 other downstream 914009 27484091 ~ 27488961 (-) True XLOC_019657
TCONS_00038698 other downstream 919932 27482149 ~ 27483038 (-) False XLOC_019657
TCONS_00038689 other downstream 1181666 27204999 ~ 27221304 (-) False XLOC_019652
TCONS_00038723 other upstream 371912 28783827 ~ 28783944 (-) True XLOC_019671
TCONS_00038726 other upstream 534100 28946015 ~ 28950927 (-) False XLOC_019673
TCONS_00038727 other upstream 534100 28946015 ~ 28952986 (-) False XLOC_019673
TCONS_00038729 other upstream 538334 28950249 ~ 28952522 (-) False XLOC_019673
TCONS_00038752 other upstream 1321521 29733436 ~ 29971309 (-) False XLOC_019685

Expression Profile

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