RNA id: TCONS_00039248


Basic Information

Item Value
RNA id TCONS_00039248
length 657
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id XLOC_019666
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 28493077 ~ 28504695 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAATCGACTTCCGGTCAACAAACTTTACCTGAACGCACGTTTcgaacattgttttttttcttgtgaaagCTACATTTGACAACAAGGAGCAAACAGCTCAGCGTAAAGAAGACCGGAGTGTCTGGAGGAATGGAGAGGTAGCTGGGTGCCTCAAAGAAGAGAAGTTGTGCAGGTAAATCTGTGCGATGGTGGTCCCGACATGTTAAAAGCGATAAAACCGGACAAACTGCTTTCAGTCCATGACAGATGGATCACTCAGACTCGACCGAGTCCCTCTTCTTGTAGTTCTCCAGGTTGGATAGAACCCATCCGGCTGGTCCCAGGATGGCCAGAGTGAATATGGCCAGAGCGGCTGTTGTCTCCTGTAGAAACACACAATAAATGTGGGTGTTAGGCTGGTACACGTTGTTTTTTCACTGTAATTTCCAGTATAGAAGTCATATAAGATTATTACAACATATACACTAGTCAAGTTTACAGAATTgagctgtaatttatttattaaacatttattctgtAGCTAAGGCTTTTTAATCCCcaaaactttaatatatatatatattttttatttaacctcCTTCAGACAATCTAATACTATTGTCAAAAAAACATTCGACAAGATGTTTAACTAATACTGTGTTACTTGGTGATTAATA

Function

GO:

id name namespace
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0006396 RNA processing biological_process
GO:0018205 peptidyl-lysine modification biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039658 lncRNA downstream 88123 28402970 ~ 28411915 (-) True XLOC_019664
TCONS_00039657 lncRNA downstream 136224 28363474 ~ 28363814 (-) True XLOC_019663
TCONS_00038712 lncRNA downstream 265094 28145980 ~ 28234944 (-) True XLOC_019660
TCONS_00038704 lncRNA downstream 933300 27558490 ~ 27566738 (-) True XLOC_019658
TCONS_00038697 lncRNA downstream 1056433 27441725 ~ 27443605 (-) True XLOC_019656
TCONS_00038718 lncRNA upstream 10745 28513059 ~ 28518927 (-) True XLOC_019667
TCONS_00039660 lncRNA upstream 47435 28549749 ~ 28553913 (-) True XLOC_019668
TCONS_00039661 lncRNA upstream 226858 28729172 ~ 28731671 (-) True XLOC_019670
TCONS_00038728 lncRNA upstream 443704 28946018 ~ 28952826 (-) False XLOC_019673
TCONS_00038730 lncRNA upstream 447935 28950249 ~ 28952834 (-) False XLOC_019673
TCONS_00038713 mRNA downstream 60442 28415888 ~ 28439596 (-) False XLOC_019665
TCONS_00038714 mRNA downstream 60442 28418153 ~ 28439596 (-) True XLOC_019665
TCONS_00038708 mRNA downstream 159061 27636288 ~ 28340977 (-) False XLOC_019660
TCONS_00038709 mRNA downstream 264677 27637519 ~ 28235361 (-) False XLOC_019660
TCONS_00038707 mRNA downstream 618286 27636288 ~ 27881752 (-) False XLOC_019660
TCONS_00038717 mRNA upstream 10743 28513057 ~ 28523548 (-) False XLOC_019667
TCONS_00038719 mRNA upstream 52402 28554716 ~ 28737320 (-) False XLOC_019669
TCONS_00038720 mRNA upstream 52866 28555180 ~ 28640316 (-) False XLOC_019669
TCONS_00038721 mRNA upstream 52866 28555180 ~ 28737321 (-) False XLOC_019669
TCONS_00038722 mRNA upstream 62043 28564357 ~ 28737321 (-) True XLOC_019669
TCONS_00038711 other downstream 436716 28063206 ~ 28063322 (-) True XLOC_019662
TCONS_00038710 other downstream 553647 27946274 ~ 27946391 (-) True XLOC_019661
TCONS_00038703 other downstream 1011077 27484091 ~ 27488961 (-) True XLOC_019657
TCONS_00038698 other downstream 1017000 27482149 ~ 27483038 (-) False XLOC_019657
TCONS_00038689 other downstream 1278734 27204999 ~ 27221304 (-) False XLOC_019652
TCONS_00038723 other upstream 281513 28783827 ~ 28783944 (-) True XLOC_019671
TCONS_00038726 other upstream 443701 28946015 ~ 28950927 (-) False XLOC_019673
TCONS_00038727 other upstream 443701 28946015 ~ 28952986 (-) False XLOC_019673
TCONS_00038729 other upstream 447935 28950249 ~ 28952522 (-) False XLOC_019673
TCONS_00038752 other upstream 1231122 29733436 ~ 29971309 (-) False XLOC_019685

Expression Profile

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