RNA id: TCONS_00038851


Basic Information

Item Value
RNA id TCONS_00038851
length 465
lncRNA type retained_intron
GC content 0.42
exon number 3
gene id XLOC_019733
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 32508908 ~ 32684570 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCTGCAATACTCTATGGATGAACAGTGTCGCTTTGACTTTGGCATGGGCTACATGATGTGCACTGCGTACAGCACCTACGATCCTTGCAAGCAGCTGTGGTGCAGCCATCCTGAAAACCCTTTCTTCTGCAAGACTAAGAAGGGCCCTCCAATCGACGGAACCAAGTGTGCATCGGGGAAGAACTGTTTTAAGGGTCACTGCATCAAGCTGACACCGGACATTCTCAGGCTGGATGGCCACTGGGGTCAGTGGACCAAATTTGGTTCTTGTTCCAGAACATGTGGTGGTGGAGTTCGGTTCCGCACTCGAGAGTGTAACAACCCAGTGTGAGTGTCTGCAGAATGTTTTTGcctcaaaaaagaaaataattcatatttaaatatgaaatataattattatttaattagtcaAAAATAGTTGTatctttaataatgatttgaataaataaaataatagatgatAT

Function

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0006508 proteolysis biological_process
GO:0031012 extracellular matrix cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-070816-3 Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in several structures, including digestive system; eye; heart; pleuroperitoneal region; and thymus. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome and Ehlers-Danlos syndrome dermatosparaxis type. Orthologous to human ADAMTS2 (ADAM metallopeptidase with thrombospondin type 1 motif 2).

Ensembl:

ensembl_id ENSDART00000143149

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00038840 lncRNA downstream 177458 32354582 ~ 32374523 (-) True XLOC_019729
TCONS_00038837 lncRNA downstream 250885 32285471 ~ 32301096 (-) False XLOC_019728
TCONS_00038838 lncRNA downstream 250913 32288724 ~ 32301068 (-) True XLOC_019728
TCONS_00038835 lncRNA downstream 266418 32280911 ~ 32285563 (-) False XLOC_019728
TCONS_00039252 lncRNA downstream 273639 32126914 ~ 32278342 (-) True XLOC_019727
TCONS_00039669 lncRNA upstream 100310 32655957 ~ 32660440 (-) True XLOC_019734
TCONS_00038857 lncRNA upstream 502978 33058625 ~ 33082127 (-) False XLOC_019737
TCONS_00038858 lncRNA upstream 502978 33058625 ~ 33090204 (-) False XLOC_019737
TCONS_00039670 lncRNA upstream 503106 33058753 ~ 33076654 (-) False XLOC_019737
TCONS_00039671 lncRNA upstream 503106 33058753 ~ 33077324 (-) False XLOC_019737
TCONS_00038847 mRNA downstream 64897 32477644 ~ 32487084 (-) False XLOC_019732
TCONS_00038848 mRNA downstream 64900 32477881 ~ 32487081 (-) True XLOC_019732
TCONS_00038846 mRNA downstream 64920 32476709 ~ 32487061 (-) False XLOC_019732
TCONS_00038843 mRNA downstream 84182 32457448 ~ 32467799 (-) False XLOC_019731
TCONS_00038844 mRNA downstream 84182 32457466 ~ 32467799 (-) False XLOC_019731
TCONS_00038852 mRNA upstream 201954 32757601 ~ 32781612 (-) True XLOC_019735
TCONS_00038854 mRNA upstream 451003 33006650 ~ 33032715 (-) False XLOC_019736
TCONS_00038853 mRNA upstream 451003 33006650 ~ 33032715 (-) False XLOC_019736
TCONS_00038855 mRNA upstream 451118 33006765 ~ 33031621 (-) False XLOC_019736
TCONS_00038856 mRNA upstream 451302 33006949 ~ 33032716 (-) True XLOC_019736
TCONS_00038828 other downstream 469832 32076707 ~ 32082149 (-) True XLOC_019725
TCONS_00038827 other downstream 470603 32073529 ~ 32081378 (-) False XLOC_019725
TCONS_00038821 other downstream 1214196 31337670 ~ 31337785 (-) True XLOC_019722
TCONS_00038809 other downstream 1557432 30974165 ~ 30994549 (-) True XLOC_019715
TCONS_00038807 other downstream 1663607 30886127 ~ 30888374 (-) True XLOC_019714
TCONS_00038861 other upstream 581301 33136948 ~ 33137083 (-) True XLOC_019739
TCONS_00038875 other upstream 1874813 34430460 ~ 34536374 (-) True XLOC_019748
TCONS_00038902 other upstream 4517304 37072951 ~ 37073080 (-) True XLOC_019765
TCONS_00038929 other upstream 5507550 38063197 ~ 38063314 (-) True XLOC_019777
TCONS_00038943 other upstream 6171452 38727099 ~ 38730018 (-) False XLOC_019784

Expression Profile

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