RNA id: TCONS_00038977


Basic Information

Item Value
RNA id TCONS_00038977
length 1029
lncRNA type retained_intron
GC content 0.36
exon number 4
gene id XLOC_019808
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 40139036 ~ 40174677 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGACTTTCTCCAGCTCTTCAGTCTCAGCCACAGCTAACAATACAAAATGACAGCATTCGAACCCCAAGGAAACCCACAGACAGCGCGACCTCGTAGATCAATGGGTCTCTTCAACAATATCAAGTTTTTTGTACTGTGTCATGGGATGCTCCAGCTTTCTCAGCTCCTGGTGTCGGGCTATCTGAAGGCTTCCATCACCACCATCGAGAAAAGATACGGATTTTCCAGTTCAAAGTCAGGACTTTTGGCAGCCTTCAATGAGGTGGGGAACACAGTTCTCATTGTGTTTGTGAGTTTCTTTGGGAGTCGCGTGCATCGACCAAGATGTATTGGAATCGGAGGAATGATTGCAAGCATGGGAGTGTTTCTCATTGCCCTGCCTCACTTCATTAGCGAAAAGTATGAATATACAGAATTCATTAGCAGTAAGTATGCATTTTTTCTTTAGGTCATCCAGAATTTACTTTAAAGCTTAGTTCTCCCCCCAAAATTtacctttaaaatggtttaacaCTTCAGATCTTCTTGTCCATCTTcagaacataaataaaattaattttaatcaaatttgaaAGTATTCTTTTGAAAGTATATTTATTCTCTGATGCCTAAAAACCTTTgttataaatgacaaattattttatttattttaagtcttCGAAAGAGGTATGATCACTTAATAATGAACAGGTTTCATGTGCTTTCCACATACTAATATTGATCAATGAACACGAATGAACATCTGAATCCCACACACAAAAAACGATTGGGTTTCTTCTTGGATTAAACTGCtcattatgttttaatatatttatgaacATTATTTGAAGCATCAGGTGAACAAATATTCAGTTTCTCATTTTTCAGATATCATTAAAATATTGCGTTATTATGAAAAATTCTCATAGGTCAGTAATGACAGAATGTTACAGAGACctggaagggacgtgatggtgtgGGGAAAGaaatgggtgaaaaaaaaaagtgggagggagaaaaaaatggataggaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0015721 bile acid and bile salt transport biological_process
GO:0043252 sodium-independent organic anion transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015347 sodium-independent organic anion transmembrane transporter activity molecular_function
GO:0015125 bile acid transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051023-6 Predicted to enable bile acid transmembrane transporter activity and sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in bile acid and bile salt transport and sodium-independent organic anion transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including gill; liver; pleuroperitoneal region; skeletal muscle; and ventral mesenchyme. Orthologous to human SLCO2B1 (solute carrier organic anion transporter family member 2B1).

Ensembl:

ensembl_id ENSDART00000144976

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00038976 lncRNA downstream 6180 40157865 ~ 40160887 (-) False XLOC_019808
TCONS_00039260 lncRNA downstream 242623 39923770 ~ 39924444 (-) True XLOC_019802
TCONS_00039259 lncRNA downstream 254960 39905903 ~ 39912107 (-) True XLOC_019801
TCONS_00039258 lncRNA downstream 503688 39653591 ~ 39663379 (-) True XLOC_019800
TCONS_00039257 lncRNA downstream 562455 39603566 ~ 39604612 (-) True XLOC_019798
TCONS_00039689 lncRNA upstream 74464 40249111 ~ 40250025 (-) False XLOC_019809
TCONS_00039261 lncRNA upstream 74464 40249111 ~ 40250025 (-) True XLOC_019809
TCONS_00038988 lncRNA upstream 202859 40377506 ~ 40384101 (-) True XLOC_019812
TCONS_00039690 lncRNA upstream 354140 40528787 ~ 40532423 (-) False XLOC_019814
TCONS_00039008 lncRNA upstream 847186 41021833 ~ 41024938 (-) False XLOC_019823
TCONS_00038970 mRNA downstream 83500 40053666 ~ 40083567 (-) False XLOC_019807
TCONS_00038971 mRNA downstream 83635 40054129 ~ 40083432 (-) False XLOC_019807
TCONS_00038969 mRNA downstream 117425 40045224 ~ 40049642 (-) True XLOC_019806
TCONS_00038968 mRNA downstream 126889 40021263 ~ 40040178 (-) True XLOC_019805
TCONS_00038967 mRNA downstream 151537 39992151 ~ 40015530 (-) True XLOC_019804
TCONS_00038980 mRNA upstream 73473 40248120 ~ 40250500 (-) False XLOC_019809
TCONS_00038981 mRNA upstream 139230 40313877 ~ 40317054 (-) False XLOC_019810
TCONS_00038982 mRNA upstream 139359 40314006 ~ 40317035 (-) True XLOC_019810
TCONS_00038983 mRNA upstream 163386 40338033 ~ 40348790 (-) True XLOC_019811
TCONS_00038984 mRNA upstream 178896 40353543 ~ 40398932 (-) False XLOC_019812
TCONS_00038972 other downstream 85138 40077951 ~ 40081929 (-) True XLOC_019807
TCONS_00038955 other downstream 899761 39267225 ~ 39267306 (-) True XLOC_019791
TCONS_00038943 other downstream 1437049 38727099 ~ 38730018 (-) False XLOC_019784
TCONS_00038929 other downstream 2103753 38063197 ~ 38063314 (-) True XLOC_019777
TCONS_00038902 other downstream 3093987 37072951 ~ 37073080 (-) True XLOC_019765
TCONS_00038990 other upstream 228613 40403260 ~ 40411647 (-) True XLOC_019813
TCONS_00039012 other upstream 1076784 41251431 ~ 41251548 (-) True XLOC_019825
TCONS_00039016 other upstream 1176898 41351545 ~ 41351665 (-) True XLOC_019828
TCONS_00039031 other upstream 1689007 41863654 ~ 41873097 (-) True XLOC_019836
TCONS_00039061 other upstream 3215754 43390401 ~ 43393079 (-) True XLOC_019853

Expression Profile

//