RNA id: TCONS_00040109


Basic Information

Item Value
RNA id TCONS_00040109
length 548
RNA type processed_transcript
GC content 0.52
exon number 3
gene id XLOC_020142
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 7439186 ~ 7447391 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTACCATGATTTTACTACTTATTTTATCAAcccataataatattaaacattttctAAAGGTTATAGCGCCCCCTAGCTTCCAACACGAGCGAAATGTgtgttttaaactgtttttactcTCAGATATGATATTGCTCTTCTGCGCCTGTCCTCCAACGCCTCCCTGAACACATACGTGCAGTTGGGCACTCTTCCCCCCTCTGGACAGGTTCTGCCCCACAACAACGCCTGCTACATCACTGGCTGGGGCCTCACTTCCACTGGTGGCTCCCTCTCCGCTCAGCTGAAACAGGCCTATCTGCCCGTGGTCGACTACAATACCTGCTCTCGTGGTGACTGGTGGGGAAGCACCGTGAAGAACACCATGGTTTGCGCTGGTGGCGGAAGCCTGTCTGGATGCCAGggTGACTCTGGCGGTCCTCTGAACTGTCAGGTCAGCGGTCAGTACGTCGTCCACGGTGTGACCAGCTTTGTGTCTTCATCCGGTTGTAACGCCTACCAGAAGCCAACCGTCTTCACTCGCGTCTCTGCCTACATCAGCTGGATTA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005615 extracellular space cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040808-55 Predicted to enable serine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in extracellular space. Is expressed in hatching gland and pancreas. Orthologous to human CELA1 (chymotrypsin like elastase 1).

Ensembl:

ensembl_id ENSDART00000143159

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042042 lncRNA upstream 375526 7033248 ~ 7067789 (+) False XLOC_020141
TCONS_00040104 lncRNA upstream 375526 7033381 ~ 7067789 (+) True XLOC_020141
TCONS_00042041 lncRNA upstream 415799 7025462 ~ 7027516 (+) False XLOC_020140
TCONS_00041874 lncRNA downstream 8128 7452173 ~ 7452420 (+) True XLOC_020143
TCONS_00042044 lncRNA downstream 101779 7545824 ~ 7556620 (+) True XLOC_020149
TCONS_00042045 lncRNA downstream 232307 7676352 ~ 7972344 (+) True XLOC_020151
TCONS_00042046 lncRNA downstream 233186 7677231 ~ 7972869 (+) True XLOC_020152
TCONS_00042047 lncRNA downstream 326872 7770917 ~ 7801971 (+) True XLOC_020155
TCONS_00040107 mRNA upstream 724 7439514 ~ 7442591 (+) False XLOC_020142
TCONS_00040102 mRNA upstream 528758 6905210 ~ 6914557 (+) True XLOC_020138
TCONS_00040101 mRNA upstream 549287 6892296 ~ 6894028 (+) True XLOC_020137
TCONS_00040100 mRNA upstream 583877 6858787 ~ 6859438 (+) True XLOC_020134
TCONS_00040099 mRNA upstream 588359 6843363 ~ 6854956 (+) True XLOC_020133
TCONS_00040111 mRNA downstream 18952 7462997 ~ 7470338 (+) True XLOC_020144
TCONS_00040112 mRNA downstream 28375 7472420 ~ 7476352 (+) True XLOC_020145
TCONS_00040113 mRNA downstream 36420 7480465 ~ 7483755 (+) True XLOC_020146
TCONS_00040114 mRNA downstream 42822 7486867 ~ 7492548 (+) True XLOC_020147
TCONS_00040115 mRNA downstream 53274 7497319 ~ 7508894 (+) True XLOC_020148
TCONS_00040103 other upstream 494809 6943403 ~ 6948506 (+) False XLOC_020139
TCONS_00040089 other upstream 866375 6571847 ~ 6576940 (+) True XLOC_020123
TCONS_00040079 other upstream 1152965 6290234 ~ 6290350 (+) True XLOC_020115
TCONS_00040065 other upstream 1630861 5810877 ~ 5812454 (+) True XLOC_020101
TCONS_00040051 other upstream 2135741 5307485 ~ 5307574 (+) True XLOC_020090
TCONS_00040122 other downstream 821488 8265533 ~ 8265649 (+) True XLOC_020159
TCONS_00040135 other downstream 1251051 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040140 other downstream 1322322 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040142 other downstream 1342122 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040167 other downstream 1915854 9359899 ~ 9383484 (+) True XLOC_020197

Expression Profile

//