RNA id: TCONS_00040142


Basic Information

Item Value
RNA id TCONS_00040142
length 127
RNA type rRNA
GC content 0.50
exon number 1
gene id XLOC_020180
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 8772363 ~ 8809496 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gccggcagctagctctctgcaactttcatTTGGTCACACATGTTGGTTTCACATAAAGCTAAGCAGGGAagcgcccagtcagtacctggatgggagaccagatgggaaagctagattgctgctTGAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDART00000125924

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042053 lncRNA upstream 24537 8621298 ~ 8761630 (+) True XLOC_020174
TCONS_00042054 lncRNA upstream 86237 8697259 ~ 8699930 (+) True XLOC_020176
TCONS_00041878 lncRNA upstream 211260 8571065 ~ 8574907 (+) False XLOC_020171
TCONS_00041879 lncRNA upstream 211360 8571068 ~ 8574807 (+) True XLOC_020171
TCONS_00041877 lncRNA upstream 214828 8570621 ~ 8571339 (+) False XLOC_020171
TCONS_00042056 lncRNA downstream 14162 8800455 ~ 8808460 (+) True XLOC_020180
TCONS_00042057 lncRNA downstream 35204 8821497 ~ 8837723 (+) True XLOC_020181
TCONS_00042058 lncRNA downstream 52132 8838425 ~ 8854534 (+) False XLOC_020182
TCONS_00042059 lncRNA downstream 62836 8849129 ~ 8854534 (+) True XLOC_020182
TCONS_00041880 lncRNA downstream 99755 8886048 ~ 8894141 (+) True XLOC_020183
TCONS_00040138 mRNA upstream 15810 8753092 ~ 8770357 (+) False XLOC_020179
TCONS_00040139 mRNA upstream 16696 8753365 ~ 8769471 (+) False XLOC_020179
TCONS_00040133 mRNA upstream 37366 8612462 ~ 8748801 (+) True XLOC_020173
TCONS_00040137 mRNA upstream 52440 8728969 ~ 8733727 (+) True XLOC_020178
TCONS_00040136 mRNA upstream 83266 8701238 ~ 8702901 (+) True XLOC_020177
TCONS_00040143 mRNA downstream 13562 8799855 ~ 8809496 (+) False XLOC_020180
TCONS_00040144 mRNA downstream 14139 8800432 ~ 8808344 (+) False XLOC_020180
TCONS_00040145 mRNA downstream 193662 8979955 ~ 8996337 (+) False XLOC_020185
TCONS_00040146 mRNA downstream 216797 9003090 ~ 9009188 (+) True XLOC_020186
TCONS_00040147 mRNA downstream 223203 9009496 ~ 9057108 (+) False XLOC_020187
TCONS_00040140 other upstream 16774 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040135 other upstream 86934 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040122 other upstream 520518 8265533 ~ 8265649 (+) True XLOC_020159
TCONS_00040110 other upstream 1341962 7443599 ~ 7444205 (+) True XLOC_020142
TCONS_00040109 other upstream 1342122 7443315 ~ 7444045 (+) False XLOC_020142
TCONS_00040167 other downstream 573606 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040182 other downstream 1000774 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040207 other downstream 1372865 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040218 other downstream 1707962 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040220 other downstream 1767435 10553728 ~ 10558972 (+) True XLOC_020230

Expression Profile

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