RNA id: TCONS_00040143


Basic Information

Item Value
RNA id TCONS_00040143
length 3022
RNA type mRNA
GC content 0.34
exon number 4
gene id XLOC_020180
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 8772363 ~ 8809496 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttttacacttttttgctGTAAAGTAGTAATTGAGCAATTTTAGTCAGAAAAACATATTCTGCAAATTaggtaataataaagaaaaattacaTTTGTGAATGTAGAGCTGTTCAGCgtctgcttttttatttatttattattttttttattaatgtcagGGTAACAATAACATCATAGAAATGCAAGAGTGTACATGAGTTTTACAGAGGAGCAAATAAACAAGTAAgcacataaaaaagaaaagataacaagaataaaaagaaaaacaaataatattaccttatgtgttaagaaaattaaaaaaggcaAATAAGTTAACCGTTCTAATGGCTTTAAGATTTTTAGAGGAAGCAATAGTTCTAATGTACTGTTGAATTTccttttcaaaaacaataaaacaaggtatACGCTGAGAGAATTTACAGCGGTGTATATGGAATTTAGCAAGGATTAAAAGGAGATTAACTATTCAGCGTCTGCTGCAGATCAATCAACAGGTAGTATGACGTAACATCCTCGTTCTCAGAAGTCACGTGACTCTGTCGGTTTAAATAGTAAGCCGTGTCATTTCATCATTATCATGGTTCACTGCATCATCCAGTCTGGATGCGTTCAAAAGAAGAAGCAATATGACGAACCACTCTCTCCTCCTGTGGCTGTTGTTATTTCTGGACGGTGCATCTGGAGCTGTTGAGGTGTCAGTGATAAAAGGAGATTCTGTCACTCTTCAAACTGGTGTTTCTGAACTGCAGAATGATAACAAGGTAGATTGGACACATGGAGATGGCACTATAGTAGCTGAAATTGAAAAcaaggaaataaaaacaaaagatccTGCTAAGCTATTCAAAGGCAGACTGGAGATTGACAGAAAAACTGGATCTCTCACCATTATAAACATCACAACTGAAGATAAAGGATTTTATAAACTAGACATCCGCGGTAAAGATCTGATCTCCAAGAATTTCAATGTTACTGTTCGTGGTAGTGCGAAGAGGGTGTCCGTGAAGGAGGGCGAATCTGTCACTTTACACACTGGTGTTACTGACAAACAAAGATATGATCAGATATTGTGGAGGTTTAAAGATCAAGACATTGCAGAAATCAATAAAGGGAAAAATCATGTATTAGTACATGACAGGAATGAGGAGAAAAACACAATCAGATTTCAACTAAATGAAAACAGCGGATCTCTCACTATTAGTGACTCTAAAAGCATAGATTCAGGAGATTATCATCTAAACATGACCAGCAGCACACACTCTATATGGAGGACCTTTAGTGTTAATGTCAAAACTATTGAAAAAATGGACAACCAGACTCCAGGTCTTCACCCAGGTTATATAGCACTGATAGTTGTTTGTGTGTTGATAGTCCTACCTTTGGCTGCTGCTGTGATTTACTTCTGCAACAAGGGTAAGTACTGTATCACCCACGGTTCATATAATTTTAGAAAACAGGAGTAAAATcaaattaatatcattattaatgtAAGAGAGGAAATGCTAAATCACTATGAGCTTTGTTAGAGAAAACCTAATGGAAATGTGATCTTCGATTGATCTTAGCACTATGGGGTGTTGGTGTTAGGATCTTTCTATGGTCCTGTTCACACAGATGGCCCAGCAGATTCTAATACTATCTTAATCTGTTTGGAAGCACACTATAacgacacaaataaataaataaacaagtgatATTAAATAGAAATTATATCAGCCGTGCCAATGTTTTCAACAAtttatattttcttcattttcactttgacaaTTCACTATATAATTTATTCTTTATTCACATATCTTCATGTGTAACAATCAGCACTGACAGTTGAATTTGTGTTTGATTGCAGAGCATGAAATTATCTAATCAGAAAGGCCAGTATGGTAAGATATGGAGCAGTTGAGTTCTGCATGCTGCTgtacctggaaaaaaaaaaagtgttttctgcATGTGTTAAAATCTTTCATGACCTgcctatcgaaaaaaaaaataagtgtctATCTATGACTGTAACTCTTACTATTTTTAAATGGCTTTCAGTGAAGATAAACAGAATTAACTTCAAGAACTTTAAGatcagaattaaaaaattaaaaagatacCACCCATTAATTACATTATACAATACATTAcccaataaatacataatttaaccATGAGCTAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTCTGTCCTGTTTGTGCCTCCACACACGCATCCTGTTTGTTTCCTAATTATTGAACTGCCACAGTCATGTTTGTAATTGTAGCCTGCCTTTGGCTATAAACCAGAACAAATGTGTTTCTTGCTAAATGCACTTCAACAGTAAGCGGGGTGGAGCTGATTTACTACTGAACCGAGTTGTCATGCAACTGTCAGCTTTGAGACTCTAGGCTTTTCGGCTTTTCTTACAATGTTTTTCAAGTCTAATCTAAAGAAAACATCCTAAACACACCTGTAAGGGTTTCTATTGTCACACTAATCCATGGTAGTAGACTTCATTTACTTGGAATTCAAGAATTATCAAGAATTCAATGCATTTTCTCAAGGCTTTTTTTTCACATCAGCAGCAGTTTTATTTGTtcggtttcatttattttttatttatatatgtattctGAAGGCTTTTACAGAgggaaatgtattatatattgttGTATAAAACCAATGTTTAACACCTGGGGGGTATtcccagaaagctgggttaacttaccatctgctaaaccctgaactctcggttgatttacccaaaacctgcttaccgcgagtatgttggttccaaaacaggtgacaagagttagttaaatcaacctcatGAAGATGACCGCGGGTttatgcgcgtgcacggcacacacctgaaggcattttcagtagatcgccgaattcacgagtcaccatcaAAAaacacggtgagaaaaaaagggcaacgcacttt

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-82 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000078235

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042053 lncRNA upstream 38225 8621298 ~ 8761630 (+) True XLOC_020174
TCONS_00042054 lncRNA upstream 99925 8697259 ~ 8699930 (+) True XLOC_020176
TCONS_00041878 lncRNA upstream 224948 8571065 ~ 8574907 (+) False XLOC_020171
TCONS_00041879 lncRNA upstream 225048 8571068 ~ 8574807 (+) True XLOC_020171
TCONS_00041877 lncRNA upstream 228516 8570621 ~ 8571339 (+) False XLOC_020171
TCONS_00042057 lncRNA downstream 12001 8821497 ~ 8837723 (+) True XLOC_020181
TCONS_00042058 lncRNA downstream 28929 8838425 ~ 8854534 (+) False XLOC_020182
TCONS_00042059 lncRNA downstream 39633 8849129 ~ 8854534 (+) True XLOC_020182
TCONS_00041880 lncRNA downstream 76552 8886048 ~ 8894141 (+) True XLOC_020183
TCONS_00041881 lncRNA downstream 117869 8927365 ~ 8953552 (+) True XLOC_020184
TCONS_00040141 mRNA upstream 11662 8772363 ~ 8788193 (+) False XLOC_020180
TCONS_00040138 mRNA upstream 29498 8753092 ~ 8770357 (+) False XLOC_020179
TCONS_00040139 mRNA upstream 30384 8753365 ~ 8769471 (+) False XLOC_020179
TCONS_00040133 mRNA upstream 51054 8612462 ~ 8748801 (+) True XLOC_020173
TCONS_00040145 mRNA downstream 170459 8979955 ~ 8996337 (+) False XLOC_020185
TCONS_00040146 mRNA downstream 193594 9003090 ~ 9009188 (+) True XLOC_020186
TCONS_00040147 mRNA downstream 200000 9009496 ~ 9057108 (+) False XLOC_020187
TCONS_00040148 mRNA downstream 218388 9027884 ~ 9032861 (+) False XLOC_020187
TCONS_00040149 mRNA downstream 224790 9034286 ~ 9040190 (+) False XLOC_020187
TCONS_00040142 other upstream 13562 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 30462 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040135 other upstream 100622 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040122 other upstream 534206 8265533 ~ 8265649 (+) True XLOC_020159
TCONS_00040110 other upstream 1355650 7443599 ~ 7444205 (+) True XLOC_020142
TCONS_00040167 other downstream 550403 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040182 other downstream 977571 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040207 other downstream 1349662 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040218 other downstream 1684759 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040220 other downstream 1744232 10553728 ~ 10558972 (+) True XLOC_020230

Expression Profile

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