RNA id: TCONS_00041880


Basic Information

Item Value
RNA id TCONS_00041880
length 602
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id XLOC_020183
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 8886048 ~ 8894141 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTGCAGTATTAAGTCAGtttggttgcagctagaaagggcATCAGCATGAGGAACATTCGGTATCTTTTTTGGATCTTTCATCTCGTGAACGgtgTGTCTGGTGTTGAGGAACTACAGTTGATGGTGGGAGATTCAGTTACTTTAAATAGTGCTGAAACACCCAGCAAAGAAACAATACAGTGGCTTTTCGAGACGAAACGTATAGCTGAAATCAGAGAAGGATCCAGAGATCCGCAATACTATGATGAGCGCTTCAAAGACCAACTGGAGCTGGACAAGAAGACCggatctctgaccatcaagaACATCAACACTTATCACAGTGGACAATATAGACAAAATATTGCAGACATAAATCGCAAAAACATAGCGATACAGGTCAGAGATGGTGTGACGAATGTGTCAGTGATGAAGGGAGATACAGTCACTCTACACACTGGTGTTACTCTGAAAGATGCTGTGAAGTGGAAGTTTGGAAATCAAGACTTAACCTGTTAACAGCCGGCCCCTATTAGTTGGGCTCAAACCCACATCTGACATACACAAACTAAAGCAGTTACTGTTTTTTAACCCTTTAGGCTACAGtcataactaaaatat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042058 lncRNA upstream 31514 8838425 ~ 8854534 (+) False XLOC_020182
TCONS_00042059 lncRNA upstream 31514 8849129 ~ 8854534 (+) True XLOC_020182
TCONS_00042057 lncRNA upstream 48325 8821497 ~ 8837723 (+) True XLOC_020181
TCONS_00042055 lncRNA upstream 77588 8780733 ~ 8808460 (+) False XLOC_020180
TCONS_00042056 lncRNA upstream 77588 8800455 ~ 8808460 (+) True XLOC_020180
TCONS_00041881 lncRNA downstream 33224 8927365 ~ 8953552 (+) True XLOC_020184
TCONS_00042060 lncRNA downstream 93013 8987154 ~ 8996332 (+) True XLOC_020185
TCONS_00041882 lncRNA downstream 171945 9066086 ~ 9066418 (+) True XLOC_020189
TCONS_00041883 lncRNA downstream 199867 9094008 ~ 9096110 (+) True XLOC_020188
TCONS_00042061 lncRNA downstream 382883 9277024 ~ 9279332 (+) True XLOC_020192
TCONS_00040143 mRNA upstream 76552 8799855 ~ 8809496 (+) False XLOC_020180
TCONS_00040144 mRNA upstream 77704 8800432 ~ 8808344 (+) False XLOC_020180
TCONS_00040141 mRNA upstream 97855 8772363 ~ 8788193 (+) False XLOC_020180
TCONS_00040138 mRNA upstream 115691 8753092 ~ 8770357 (+) False XLOC_020179
TCONS_00040139 mRNA upstream 116577 8753365 ~ 8769471 (+) False XLOC_020179
TCONS_00040145 mRNA downstream 85814 8979955 ~ 8996337 (+) False XLOC_020185
TCONS_00040146 mRNA downstream 108949 9003090 ~ 9009188 (+) True XLOC_020186
TCONS_00040147 mRNA downstream 115355 9009496 ~ 9057108 (+) False XLOC_020187
TCONS_00040148 mRNA downstream 133743 9027884 ~ 9032861 (+) False XLOC_020187
TCONS_00040149 mRNA downstream 140145 9034286 ~ 9040190 (+) False XLOC_020187
TCONS_00040142 other upstream 99755 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 116655 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040135 other upstream 186815 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040122 other upstream 620399 8265533 ~ 8265649 (+) True XLOC_020159
TCONS_00040110 other upstream 1441843 7443599 ~ 7444205 (+) True XLOC_020142
TCONS_00040167 other downstream 465758 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040182 other downstream 892926 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040207 other downstream 1265017 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040218 other downstream 1600114 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040220 other downstream 1659587 10553728 ~ 10558972 (+) True XLOC_020230

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU221992 True 1945 lncRNA 0.34 2 NC_056720.1 5177689 ~ 5181252 (-)