RNA id: TCONS_00042061


Basic Information

Item Value
RNA id TCONS_00042061
length 2309
lncRNA type sense_over
GC content 0.32
exon number 1
gene id XLOC_020192
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9262800 ~ 9279332 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCTCAGTAAGAATCAAATAAGAAACACAGGAGTGAATCTCTTATGTGACGTACTGAAGGAttcacactgtaaactggagacactgggGTGAGCAACATTTACAATACAAGAATCACAATCATTAAAATCTCTTCCTCAGTTTAAATCAAGATTATTTATTCTCATTTTCTTATGATGAATCAGAGTCACTATGTATTTGTGTGGTGCTTTTAACTTGGGATTTTATGatttgatgaaaataaatgatctcTTTTCCTCTGCTGATGTCACTTTCTGCTGTCTTATAttctgctctctctttctctctctttcttcgtTGTTCTCTGACAGATGAAGGTTGTTctgctgtgactttaaataaaattttgttgtatttgtgCCACTTAATTCTGTGGTTGTTTTATTTCTCTTGTAGGTTAAATGACTGCACAATTAAACAGTTTAAATCaaaacacttcatattttctcttttatatcTCACAGTGAATTTCagcttttataatatttttacaaatttcttCATTTTTCTGATGATCCTGAATCAGATGAGTGTTTAGTGCTGATGTTGCCTTTATATGCATTCAGAAGAGTGTATACCAGATAATAATTGTGTAAAATTCGTCAGATGCATGCTAATTTCACTGTTTATGCTAAATAAAACTATATGTGAATATGTGCTTTAGCAATGAAGAaacccaaataataataataataataataataataaaaataataataataataataataatgataataataaataacaaccacAACAGCAATTGATCTTTCCTCATTGTTTATGGCTGTCAAACTCAGAAACCAACATATAAAATAAACTGATCTTAGCAGTAAATAATAGTAGCAGCAGCAACATATAACACTAGTACTGGTTTGAGAGATCACTGATGTCCAATTTCTGACTAGAATTAGCAATTTCTACATGTAATTGAAAACATGTGGAGCAGCATGAGCTCTGCAAGACTGAGACTCTCCACAAATGACTTTCACTTGTtaaacctgtgatgaaataaaaaaattatttcttcagtttttttttttttttgtctttttctagACTGTGTGACTGTGGCATCTCAGATATTTCATCTTTAACTCAGTGTTTGATGAATACAAAAGCTCTGCGGTTTCTAAAAGAGCTTGATCTGAGATTCAATCACATTGGAGACTCAAAGCAGAAGCTCATTGATGTGATGCGAGACTCAAACTGTAAACTGATGTAAGTAAACAACACTGATATTAAAGATCTTCATTTTCCTCTGAGATGTGAAATCTTTCAGATGTGTCTGAGAGGAAATGATCAAATGATCATCAAGCTTTATTTGATGAGCACAGAGTGTGCAGTGTCTGCAATAGATGAAGAGAAAGGAGGAAAGAGCAGAAGAGCTGCGAGTCAGAGCTTTATCCAGCAACAGctgctttattaaaataacattaatcaCAGAAAGTGTTCAGACATCAGCTTGTGTTTCTCAGCACTCACAGGCTTAAACACATGAACACCATTACTGCTTTAAATGTATTCGATTTAAAACACAATTGGTGTTTTAGAAATACAGTATCTGTGCAGGAGAATATTAAGTTAATAATTGTTCTGATTACAGGAATTTATTATGAATTTGTTTACCAAAAAAGCAGTAATTGAGATGTAGTAGAAATGAATCTGTACTGTTTCACTGAACATTGACTGTTTTCTCTTCTGGTTTCACCTTCAGAATAAAGCGTCAGCGGCCTGATGACTCGAGATGCTGTATATCATAGTCAGCTTTGAAGATGAGAGGATCAGTGAACATCAGTTGAGGATCCACAGAAGAGTCTCAATACTGTGGTAAAATGTAGGATTAGAATGTGATGATAAATGTTAAATCAGGTGAAGAGACTCAGAATGACAAGCAAATAATACAGTGTGTGTTAGAAACATGATATTGAATCTATTTTCATTAcacaatttttaattattaatatacatttttaagtaCAATACTTAAATGTTTCAAAAGTAGAACAACGATAAAATTCCAAAAGTAGGTGTTCTTAAATTTCATTTTTAGCATATCTTTAttactgtattatattttatattctgcTTGCTATATGTGTCTGTTTCTGATGCACAAATGTTCAGCATATTGTGTTTGTTCTGTTGGAAAAAAGggatatttgttttctttttttttcttttcattaaacaattgtatttgtattgcttaaggtGAAACATTAACCAAACTTGTTCTCTTGAGTGTGATATGCCTTGCATACAAATGAAGCTGATATTAATGCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041883 lncRNA upstream 180914 9094008 ~ 9096110 (+) True XLOC_020188
TCONS_00041882 lncRNA upstream 210606 9066086 ~ 9066418 (+) True XLOC_020189
TCONS_00042060 lncRNA upstream 280692 8987154 ~ 8996332 (+) True XLOC_020185
TCONS_00041881 lncRNA upstream 323472 8927365 ~ 8953552 (+) True XLOC_020184
TCONS_00041880 lncRNA upstream 382883 8886048 ~ 8894141 (+) True XLOC_020183
TCONS_00042062 lncRNA downstream 43425 9322757 ~ 9323817 (+) True XLOC_020194
TCONS_00041884 lncRNA downstream 62123 9341455 ~ 9343000 (+) True XLOC_020195
TCONS_00040165 lncRNA downstream 72040 9351372 ~ 9354371 (+) False XLOC_020196
TCONS_00040166 lncRNA downstream 73476 9352808 ~ 9359403 (+) True XLOC_020196
TCONS_00042063 lncRNA downstream 80567 9359899 ~ 9383484 (+) False XLOC_020197
TCONS_00040160 mRNA upstream 21736 9239831 ~ 9255288 (+) True XLOC_020191
TCONS_00040158 mRNA upstream 50142 9126557 ~ 9226882 (+) False XLOC_020190
TCONS_00040159 mRNA upstream 50221 9206514 ~ 9226803 (+) True XLOC_020190
TCONS_00040156 mRNA upstream 145494 9110998 ~ 9131530 (+) False XLOC_020190
TCONS_00040157 mRNA upstream 156505 9114416 ~ 9120519 (+) False XLOC_020190
TCONS_00040162 mRNA downstream 7157 9286489 ~ 9315124 (+) False XLOC_020193
TCONS_00040163 mRNA downstream 8597 9287929 ~ 9289868 (+) False XLOC_020193
TCONS_00040164 mRNA downstream 15004 9294336 ~ 9305780 (+) True XLOC_020193
TCONS_00040168 mRNA downstream 110469 9389801 ~ 9455759 (+) False XLOC_020198
TCONS_00040169 mRNA downstream 139170 9418502 ~ 9421177 (+) False XLOC_020198
TCONS_00040142 other upstream 490731 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 507631 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040135 other upstream 577791 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040122 other upstream 1011375 8265533 ~ 8265649 (+) True XLOC_020159
TCONS_00040110 other upstream 1832819 7443599 ~ 7444205 (+) True XLOC_020142
TCONS_00040167 other downstream 80567 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040182 other downstream 507735 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040207 other downstream 879826 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040218 other downstream 1214923 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040220 other downstream 1274396 10553728 ~ 10558972 (+) True XLOC_020230

Expression Profile

//