RNA id: TCONS_00040159


Basic Information

Item Value
RNA id TCONS_00040159
length 4333
RNA type mRNA
GC content 0.42
exon number 16
gene id XLOC_020190
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9110998 ~ 9226882 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAAGAGCCGCAGCAATTTCGAAGACAAACTCCAGTGGATCTTCCATgaccttgaaaataaaatatttgaattcCTGAAGAAAGAGTTGGAAAAGTGTAagacaatattaaaaaaagaaaatacacaatTCTTTGTAAAGGATTTAAATGAGAACAGATGCAGAGTAaaagaagcagctcttgatctcacactttACTTCCTGAGAGAAATGAAGCAAGATGAAGCTGCAGATACTCTAGAAGGTgagctgttcttcattaatcAGTTAAAATGTAGTCTACAGAAGAAGTATCAGTgcgtgtttgaaggaattgcacagcaaggagactccacactccTGAAgaacatctacacagatctctatatcactcagggtgaCAGTGAACAGGTCAATACTGAACATGAGGTCAGACAGATTGAAGTTGCTTCCAGACGTCATGAAGCTCaagagatacaggttgaatgcagAAATTTGTTTGAAGCGTCTGAACAAGAcaagcagatcagaactgtcctgacaaaaggagtcgCTGGCATCGgtaaatcagtctctgtgcaaaagtttgttctggattgggctgaaggaaaagaaaatcaagagatcagcttcatatttcctcttccattcagagagatgaacttaaaggagaaagaaaaacTCAGTTTGATGGAGCTTATAACTCAGTTTTACCCAGAGAcaaaaggactgaaccttacaagaaggaatcgattcaaagtcctgttcatccttgatggattggatgagtgtcgtcttcctctgaactttgctggtaatgagacgtgtcgtgATGTTTCGTCACCAgcctctctggatgttctcctgacaaacctcatcaagggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgccagtaagattcctccTGACTGTATCGagcggctgacagagatacgaggattcaatgatgagcaaaaggaggagtacttcagaaaaaGACTCACAGATGAGAATCAGGCCaaagaaatcattgatcacattaaacaatCAAAGAGTCTCTtcatcatgtgccacatcccagtcttctgctggatttcagccactgttctccagaacatttTACAGGAGAAGAGAAATAATGATGTGAAACACAATCAGGCTGATGACGCctccaaaacactgcaggaatCAAACACTGAAGACACTCCCAAGACTCCGacacaaatgtacacacactttctgcgctttcagatccagcagagcagacgaaagtatgatggagaataCACACCAGATGTTTCCTGGGATAAAGACGCCATCCTTTCACTGGGAAAACTGGCATTTGATAACCTGCAAAGAAATAACCTGATTTTCTATGACACAGACCTGGAAGCCTGTGGTATTGACGTCTATAAGGCCTCAGtttactcaggcatgtgtacccagatctttaaggaggaaaCAGGGATTGctcttggtaccatgtactgctttgtTCACTTGAGCATTCAAGAGTTTATTGCAGCCATTTATGCACATCTGATTCTGGACATCAACAAGAAAAGTGTGTTTGATCAAGACTCTAACAGCAGAAATGAGTCCATGATTGATTTGCTGAAGACTGCAGTGAACAAGGCACTTGAGAGTGACAATGGACACCTGGACCTTTtccttcgcttccttctcggtctgtcactgCAGTCCAATCGAAGACTCTTACGAGGTCTGTTGACACAGCGAGATGAAATTAACCAGATCAAAGAGGAAATAGTTCAGTACATCAAGCAGAAGTTTGAAGCGAATCTTTCTCCAGAGAggtccatcaatctgttctactgtctgaatgaactgaacgaccaaactctggTGAAAGAGATTCAGACTCACCTTAGCAAAGGAAGTCTCTCATCTGCTGatctttcacctgcccagtggtctgctctggtaTTTGTGTTGTTGACATCAGAGGAGGAaatggaggagtttgagcttcagaaattcatgaagtcagacgagtgtctcatcagactatcagcagtcatccAAACCTgcaaaagagctctGTTAAATGACTGTAACTTAACAGAAAAAAGCTGTTCAGCTCTTACTTCAGTTCTCAGATCAGATACCAATCTAAAAGTGCTGAACATGAGCAATAATAATCTACAGGATTCAGGATTGAGATTGCTCTGCTCTGGAATGAAGGATATAAAGTGTGAATTGGAAGTACTGAGGCTCAGTAAGTGTGATCTAACAGAGGAAAGCTGTTCAGCTCTTGCTTCAGTTCTCAGTTCAGGCTTCAACAGTCTGAAGGATCTTGACCTGAGCAATAATAATCTACAGAATTCtggagtgaagctgctctctgatggactgaaggacAGTAACTGTACACTGGAGAAACTTGGtCTTTCAGACTGCAATATCAGTGAAGAAGGTTATAaagctctggcttcagctctgagatcaaacccttcacacctgatagagctggatctcagaggaaatgatcctggacaatcaggaGTGAAGGAGCTCGCTGAGTTACTGCAGGATCCACACTGTAAACTGAAGACACTGAGGTGTTTCAGTCCTTCAGCAGATGAAGCCTGTCAGTTTGTGTCTGGAATTGTGGGTAAAAACCTGTTACTCCTGAAAGAACTGAATCTAAATGATCATCAACTAGGAGACACACGAGTGAATCAACTCTCTGCTCTACTGCAGGATAAACACTGTCAGATCAACACACTCATGCTCCGTAACTGTGCTCTAAGAGAAGAAAGCTGTTCAGCTCTGGCTTCAGTTCTCAGATCAGAATCTAGCAGTCTGAAGGATCTTGACCTGAGCAAtaataatctgcaggattcaggagtgaagcggctctctgatggactgaaggacAGTAAACTGGAGAAACTCAGTCTTTCAGACTGCAGTATCAGTGAAGAAGGTTGTAAAGCTCTgacttcagctctgagatcaaacccttcaCACCTGATAGAGCTGAATCTCGGAGgaaatgatcctggacaatcaggaGTGAAGGAGCTCACTAATTTACTGCAGGATCCACACTGTACACTGAAGACACTGAGGTTTTTGAGTTCTGCTGCTGATGAAATCTGTCAGCATGTAGCTGAAATTGTGGGTAAAAACCCGTTACTCCTGACAGAACTGAATCTGAGTAATCATAAACTAGGAGACACACGAGTGAATCAACTCTCTGCTCTACTGCAGGACAAACACTGTAAATTTAACACACTCATTATTACAGAGCAGCAGTGTGAGATCCtgacttcagctctgaaatcaaACCCATCACACCTGAGAGAACTGGACCTCAGTCAGAATAAACTTGAATCTGGAGTGAAAAACCTCAGTGATTTACTGAAGAACCATCAATGCAAGCTGGAGAAACTAAATCTTTGTAAATGCAGTATTACAAAGGAACAGTGTGAGATCCtgacttcagctctgaaatcaaACCCATCATACCTGAGAGAACTGGACCTCAGTGAGAATCAAATAAGAAACACAGGACTGAATCTCTTATGTGATGTACTGAAGGATTCACACTGTAGACTGCAGACACTGAGGTTAAGCAGTTGTGAAATGACAGATGAAGCTTGTTCTGCTGtgacttcagctctgaaatcaaACCCATCACACCTGAGAGAACTGAACCTGAGCTATAATAAACTAGGAGACTCTGGAGTGAAAAACCTCAGTTATTTACTGATGAAGCCACAATTCAAGCTGGAGAAACTACATCTGTGTAACTGCAGTATTACAGAGGAACAGTGTGTGATCCtgacttcagctctgaaatcaaACCCATCACACCTGAGAGAACTGAACCTCAGCTGTAATGAACTAGCAGACTCTGGAGTGAAAAACCTCAGTGATTTACTGATGAAGCCACAATTCAGGCTGGAGAAACTACAGTTAGTATCATTATACCGTGCAGTAGATACTGTGAAATTAAAGATTATCAATCTGTATAAATGCAGCATTACAGAGAAACAGTGTAAGATCCtgacttcagctctgaaatcaaACCCATCACACCTGAGAGAACTGAACCTCAGTGAGAATCAAATAAGAAACACTGGAGTGAATCTCTTATGTGACGTACTGAAGGATTCACACTGTAAACTGAAGACACTGAGACTATTGTGCTGTGGCATCTCAGATGTTTCTTCTTTAACTCAGTGTTTGAAGAACACAAAAGCTCTGCAGTTTCTAAAAGAGGTTAACCTGAGCTACAACTCCATTGAAGCCTCAAAGCAGCAGCTCATTGATGTGATACGAAACTCAAGCTGTGAACTGAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000141625

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041883 lncRNA upstream 110404 9094008 ~ 9096110 (+) True XLOC_020188
TCONS_00041882 lncRNA upstream 140096 9066086 ~ 9066418 (+) True XLOC_020189
TCONS_00042060 lncRNA upstream 210182 8987154 ~ 8996332 (+) True XLOC_020185
TCONS_00041881 lncRNA upstream 252962 8927365 ~ 8953552 (+) True XLOC_020184
TCONS_00041880 lncRNA upstream 312373 8886048 ~ 8894141 (+) True XLOC_020183
TCONS_00042061 lncRNA downstream 50221 9277024 ~ 9279332 (+) True XLOC_020192
TCONS_00042062 lncRNA downstream 95954 9322757 ~ 9323817 (+) True XLOC_020194
TCONS_00041884 lncRNA downstream 114652 9341455 ~ 9343000 (+) True XLOC_020195
TCONS_00040165 lncRNA downstream 124569 9351372 ~ 9354371 (+) False XLOC_020196
TCONS_00040166 lncRNA downstream 126005 9352808 ~ 9359403 (+) True XLOC_020196
TCONS_00040156 mRNA upstream 74984 9110998 ~ 9131530 (+) False XLOC_020190
TCONS_00040157 mRNA upstream 85995 9114416 ~ 9120519 (+) False XLOC_020190
TCONS_00040153 mRNA upstream 110266 9060699 ~ 9096248 (+) False XLOC_020188
TCONS_00040155 mRNA upstream 112444 9091913 ~ 9094070 (+) False XLOC_020188
TCONS_00040154 mRNA upstream 135303 9069081 ~ 9071211 (+) False XLOC_020188
TCONS_00040160 mRNA downstream 13028 9239831 ~ 9255288 (+) True XLOC_020191
TCONS_00040161 mRNA downstream 35997 9262800 ~ 9279158 (+) False XLOC_020192
TCONS_00040162 mRNA downstream 59686 9286489 ~ 9315124 (+) False XLOC_020193
TCONS_00040163 mRNA downstream 61126 9287929 ~ 9289868 (+) False XLOC_020193
TCONS_00040164 mRNA downstream 67533 9294336 ~ 9305780 (+) True XLOC_020193
TCONS_00040142 other upstream 420221 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 437121 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040135 other upstream 507281 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040122 other upstream 940865 8265533 ~ 8265649 (+) True XLOC_020159
TCONS_00040110 other upstream 1762309 7443599 ~ 7444205 (+) True XLOC_020142
TCONS_00040167 other downstream 133096 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040182 other downstream 560264 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040207 other downstream 932355 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040218 other downstream 1267452 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040220 other downstream 1326925 10553728 ~ 10558972 (+) True XLOC_020230

Expression Profile

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