RNA id: TCONS_00042062


Basic Information

Item Value
RNA id TCONS_00042062
length 297
lncRNA type inter_gene
GC content 0.58
exon number 2
gene id XLOC_020194
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9322757 ~ 9323817 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCGGGTCTCCGGGCGGGTACAGCCGCGGTCTCCAGCAGCAGGAGCGCAAACAGCAGCAGCTCGGAGAAGCGTCCGGTTCCCCGCAACATCTCTGCGCCGTCGCCCTTAGGAAAGCCGTGTAAAAGCTGAGCATTTAttcaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgattatccGGCTGGCCATGGGGATCCTGCCCGGTGCGCGGAGAGAAATGCGGATGAGCACAAACCCAACAGAAACagaaccaca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042061 lncRNA upstream 43425 9277024 ~ 9279332 (+) True XLOC_020192
TCONS_00041883 lncRNA upstream 226647 9094008 ~ 9096110 (+) True XLOC_020188
TCONS_00041882 lncRNA upstream 256339 9066086 ~ 9066418 (+) True XLOC_020189
TCONS_00042060 lncRNA upstream 326425 8987154 ~ 8996332 (+) True XLOC_020185
TCONS_00041881 lncRNA upstream 369205 8927365 ~ 8953552 (+) True XLOC_020184
TCONS_00041884 lncRNA downstream 17638 9341455 ~ 9343000 (+) True XLOC_020195
TCONS_00040165 lncRNA downstream 27555 9351372 ~ 9354371 (+) False XLOC_020196
TCONS_00040166 lncRNA downstream 28991 9352808 ~ 9359403 (+) True XLOC_020196
TCONS_00042063 lncRNA downstream 36082 9359899 ~ 9383484 (+) False XLOC_020197
TCONS_00042064 lncRNA downstream 87791 9411608 ~ 9419402 (+) False XLOC_020198
TCONS_00040162 mRNA upstream 7633 9286489 ~ 9315124 (+) False XLOC_020193
TCONS_00040164 mRNA upstream 16977 9294336 ~ 9305780 (+) True XLOC_020193
TCONS_00040163 mRNA upstream 32889 9287929 ~ 9289868 (+) False XLOC_020193
TCONS_00040161 mRNA upstream 43599 9262800 ~ 9279158 (+) False XLOC_020192
TCONS_00040160 mRNA upstream 67469 9239831 ~ 9255288 (+) True XLOC_020191
TCONS_00040168 mRNA downstream 65984 9389801 ~ 9455759 (+) False XLOC_020198
TCONS_00040169 mRNA downstream 94685 9418502 ~ 9421177 (+) False XLOC_020198
TCONS_00040170 mRNA downstream 105893 9429710 ~ 9432225 (+) False XLOC_020198
TCONS_00040171 mRNA downstream 108036 9431853 ~ 9437021 (+) False XLOC_020198
TCONS_00040172 mRNA downstream 116266 9440083 ~ 9459026 (+) True XLOC_020198
TCONS_00040142 other upstream 536464 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 553364 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040135 other upstream 623524 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040122 other upstream 1057108 8265533 ~ 8265649 (+) True XLOC_020159
TCONS_00040110 other upstream 1878552 7443599 ~ 7444205 (+) True XLOC_020142
TCONS_00040167 other downstream 36082 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040182 other downstream 463250 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040207 other downstream 835341 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040218 other downstream 1170438 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040220 other downstream 1229911 10553728 ~ 10558972 (+) True XLOC_020230

Expression Profile

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