RNA id: TCONS_00040172


Basic Information

Item Value
RNA id TCONS_00040172
length 6136
RNA type mRNA
GC content 0.38
exon number 10
gene id XLOC_020198
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9389801 ~ 9459026 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGACTCTCATAGCAAAGTGGAGAAAATCAAGCTAAATAATTGTGAGCTGACAGAGAAAAGCTGTTCAGTTCTAGCTGCTGTTCTCTCCTCCAAAACCATCCTGAAAGAGCTGAACCTGAACAACAGTCGTCTGCTGGACTCAGGAGTCAGAAAGATCTGTGAGGGACTGAAGAATCCTGTGTGTGAGCTGAAGATACTCAATCTTTCAGACTGCAGTATTACAGAAGAAGGTTATGaagctctggcttcagctctgagatcaaacccttcacacctgatagagctggatctcagaggaaatgatcctggacaatcaggaGTGAAGGAGCTCACTGAGTTACTGCAGGATCCACACTGTGCACTGAAGACACTGAGATTTTTAAGAAGTCCTGCTGCTGATGAAGGCTGTCAGTTAGTAACTGGAGTTGTGGGTAAAAACCCGTTACTCCTGAAGGAACTGAATCTGAGTGATCATGAGCTAGGAGACACACGAGTGAATCAACTCTCTGCTCTACTGCAGGATAAACACTGCCAGATCAACACACTCAATCTGAGTTATTGCAGTATTACAGAGAAACAGTGTGAGATCCtgacttcagctctgaaatcaaACCCATCACACCTGAGAGAACTGGACCTCAGTGGGAATGAACTAGGAGACTTTCAAAGCCTTGGCTCTCTACTGAAGAACCAACAATTCAAGCTGGAGAAACTAATTCTGTGTGTTTGCAGTATTAAAGAGAAGCAGTGTGAGATCCtgacttcagctctgaaatcaaACCCATCACACCTGAGAGAACTGAACCTCAGTGGGAATGAACTCAAGCACAGAAGAGTGAAGCAATTTTTtgatgtgctgaaaaaatcaaCCTGTAAACTGGAGCGACTGAGGTTAAGATACTGTAGTATACAAGCCGATGATTGTACTGATCTGGCTTCAGCTCTGAAATCAAACCCATCCCACCTGAGAGAACTGGACCTCAGTGGAAACAATCTAGGAGACTCTGGAGTGAAAAAACTCAGTGATTTACTGATAAACCAACAATTCAAGCTGGAGAAACTACGTCTGAGTTATTGCAGTATTACAGAGAAACAGTGTGTGATCCtgacttcagctctgaaatcaaACCCATCACACCTGAGAGAACTGAACCTCAATGGGAATAGACTAGGAGACTCTGGAGCTGATGGCCTTAACCATCTGCTGAGCAGTGTGGATTGCAAGCTAAATAAACTACATCTGTGTGATTGCAGTATTACAGAGAAACAGTTGCTCATCCCAATCACAGCTACGTGTATGGGCCTATTACACCTGAGAGAACTGGACCTCAGTAAGAACCAAATAAAAAACCAAGGAGTGTACATGCTGTGTGATGTGCTGAAAAACCCACGCTGTAGACTCAAGAGGTTAAGACTAAATGACTGTGGCATTACAGATGTTACACCCTTAACTCAGTCTTTGACCAAGGACAAAGCATTGAAGTTCTTAAAAGAGCTTGAACTGAGTAAAAATCAAATGGGATTCTTCGAAAAGCAAAAACTCAGTGACCTGCTGCGAGACTCAAACTGTAAACTGAGGTGAGAAAATATCTGGTCAACATCTATCTCATTGAGCAGAACTGAAGTGGGGTTCATTACAAGACAATAGTTAAAACTATTGCAAAATGCACTTCAATTCTTTTGGTTTAGTGACTGTTcatcaaattaaaattaattagtttTGTGAATGAAGATTTTCTAAATATGGTATGTACAATATTGccttgctccgggtgctccgttttcctccagaagtccaaagacatgcaccataggtgaattgggtaagctaaatttgttcgtagtaaatgtgtgtgaatgagactgtatgggtgtttcccagtaatgggttgcagctggaagggcatccgctgtgtaaaacatatgttgtataagttggcggttcattccgctgtgacgaccacagatttaaaaagggactaagccaaaaagaaaaatgaatgaatatttccttGTCTTGGTATTGTGAGCCCAGTGTTGTTTATCATCACACCCCTGCTTTTTTGCTCATTAAAATAACAGTGATTATTCTCAGCTTGTGCCACTACACACTTGTCTGTTGAATTTTTCATTGCAGGCTTGAGGAAGAAGAAGGTTATTTTAGAGCTGGTGTAAAACGGGTTACTACATTTTTGATGCCTCCATGGTCAAAAGTTCAAAAACCTGTGGATCTCACAGGAGAGGAAAGTTCATCATCAGATGAGGACGCCTCTGAAGGTTCTCAATACAGTACTGTTGTaaatctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgcgtgtgtttgcgtgtgtttgcatgtgtttgcgtgtgtttgtgcgtgcgtgcgtgcgtgtggcTGGTTTGAGTAATTGTTAAACAGGAAATAATACATACTCAAAATACATCACAATTAAGAAGAGATTTCTTATGCATACTTTTGGAATATGTgttgtatattgtatatatttattgttgGTTTGTATTCATACAagggtatttttattattttttttacagatgagACTGATCAGGCAGAGGAGGCTGATAAGCTCTCAAATGAGGCGGATTAGTTGGAAGTGCAGTATAACAACTACATCATGATGTTGGGAGTCAATTTTAGCTTTTCTGTCAAATGATATAAACAATGTCCAATGTGAACAATTAATTTCTTATGGTCTACATGTACACGGGTTCAAATAagtattagtaatatgcattgtttttattcatttagattgTAGTTACTGTATATATGACAGATAGGTTTtgcatatattttagttttttaccttttatatgcatcattttcatttaaatttgtagTAAGTTCTGTGTCTGTCTacaataaatgattgaatatcTCTCTACTAAAAAAGCTTTGGCTGTTGGAAGATGTTGTCAGTTTTCCCACATCAGCCATAAGTAACCTTTAATACAACCAGCTGACATCCCCAACAGGGATGGTCTTTGAGTAAATTTCCATGCTCTGGAAATCAGTAGTGCATTACAGAACTGTCTTACctacaaaacaataatttaattccttaaaaaaataatgtacttTTACAGTAAAAGCTTGCATATTAAAACTAACCAGCAGGCACAGGAACTCAACATGAtttcagattgacattgtacccccaACGttgtgggatgttgcattttaggttgacatcagaacttaacgtcagtgtccaacgtcgaacagacattgcattttggtcactttgcaacatacctaaaaacaaccaaatatcaacgtctaatgatgttatagcttgatgatgtgtggacgttaccactatgatatctattagatgttggattttggcaggcatacctgactaataaatgtcagtattcaaTGTCAATACGACGTTGCCATAAAATGTTGGCTTaaagttggattttggtcacttaccAAAGTTAAACAAAGTTAAAAACAACCAAGTATTAAAgacatttgacattgttattggacaATTCATTTACAATGAATTTTAGTCACTCCAcctcacaacctaaatctaaccgaatattaacatcttatgatgttgtgttccTGCTGAGTAGTGTCAGACAAGCTCTTGTGGTTAAAAAGTATACACGTTTTCCTTcttcattaatatttttcttgagtTTGACACTTTATACAAGTGTCAAAAACAGAAAGTAGCACAGTCTCTTTGTTTATGGGGGTTTCATGAGCTACTGTCAGATAAACTTCTTTTTCATTCAGGTTGTGTCCTTCATCTGTGGTGTTTGACCATCTGGGAGTGACATAAGCAATGGTCTCTGTTTATCTACAGCAGGCCATTATAGCTTGCTAAAGCTCTAGAAATTCTCTGCCAACAGAAATCTATCAGATGAAATTACTCATCACATTATGGCTATACTTTTACATAtacaaagaaaatacaaatttaccTGCAACCCCAGGGTCAATATTGATATCTATTTTTTTCTGTGACACATTTTTTCTGTGTCTGTCTCTTTCTAGACTAAATGACTGTGGCATTACAGATGTTACACCCTTAACTCAGTCTTTGACCAAGGACAAAGCATTGAAGTTCTTAAAAGAGCTTGAACTGAGTAAAAATCAAATGGGATTCTTCGAAAAGCAAAAACTCAGTGACCTGCTGCGAGACTCAAACTGTAAACTGAGGTGAGAAAATATCTGGTCAACATCTATCTCATTGAGCAGAACTGAAGTGGGGTTCATTACAAGACAATAGTTAAAACTATTGCAAAATGCACTTCAATTCTTTTGGTTTAGTGACTGTTcatcaaattaaaattaattagtttTGTGAATGAAGATTTTCTAAATATGGTATGTACAATATTGccttgctccgggtgctccgttttcctccagaagtccaaagacatgcaccataggtgaattgggtaagctaaatttgttcgtagtaaatgtgtgtgaatgagactgtatgggtgtttcccagtaatgggttgcagctggaagggcatccgctgtgtaaaacatatgttgtataagttggcggttcattccgctgtgacgaccacagatttaaaaagggactaagccaaaaagaaaaatgaatgaatatttccttGTCTTGGTATTGTGAGCCCAGTGTTGTTTATCATCACACCCCTGCTTTTTTGCTCATTAAAATAACAGTGATTATTCTCAGCTTGTGCCACTACACACTTGTCTGTTGAATTTTTCATTGCAGGCTTGAGGAAGAAGAAGGTTATTTTAGAGCTGGTGTAAAACGGGTTACTACATTTTTGATGCCTCCATGGTCAAAAGTTCAAAAACCTGTGGATCTCACAGGAGAGGAAAGTTCATCATCAGATGAGGACGCCTCTGAAGGTTCTCAATACAGTACTGTTGTaaatctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgcgtgtgtttgcgtgtgtttgcatgtgtttgcgtgtgtttgtgcgtgcgtgcgtgcgtgtggcTGGTTTGAGTAATTGTTAAACAGGAAATAATACATACTCAAAATACATCACAATTAAGAAGAGATTTCTTATGCATACTTTTGGAATATGTgttgtatattgtatatatttattgttgGTTTGTATTCATACAagggtatttttattattttttttacagatgagACTGATCAGGCAGAGGAGGCTGATAAGCTCTCAAATGAGGCGGATTAGTTGGAAGTGCAGTATAACAACTACATCATGATGTTGGGAGTCAATTTTAGCTTTTCTGTCAAATGATATAAACAATGTCCAATGTGAACAATTAATTTCTTATGGTCTACATGTACACGGGTTCAAATAagtattagtaatatgcattgtttttattcatttagattgTAGTTACTGTATATATGACAGATAGGTTTtgcatatattttagttttttaccttttatatgcatcattttcatttaaatttgtagTAAGTTCTGTGTCTGTCTacaataaatgattgaatatcTCTCTACTAAAAAAGCTTTGGCTGTTGGAAGATGTTGTCAGTTTTCCCACATCAGCCATAAGTAACCTTTAATACAACCAGCTGACAGCATTATAATGCCCTGCACAAGTTGCTTGTCTGTACAGTGATCAGACAGTctaaattatttttgattaatggTTTTTAGTAATAATGTATACAGTTATATTGCATGGTAATGtattgtaaacataaataaaaatgtgatcaTTGTATTTGCTTTGATCTGTTCATTTTTTCAGTAGCTAATAATGTATAACCTTAATAAGCATAATAAGCAGTAGATGCAGTTATTCTCCTGCTTAACTATACAGTGGAGATCAGAATATGAAAACAATGTGCAGTCTTCTAAATCTCCTAAATCTTTTCAAGGACTGGTCAGTAGGGCTGCTTGATACAGGAAAAATCGGAC

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-24 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDART00000187275

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042065 lncRNA upstream 4099 9429876 ~ 9435984 (+) False XLOC_020198
TCONS_00042064 lncRNA upstream 20681 9411608 ~ 9419402 (+) False XLOC_020198
TCONS_00042063 lncRNA upstream 56599 9359899 ~ 9383484 (+) False XLOC_020197
TCONS_00040166 lncRNA upstream 80680 9352808 ~ 9359403 (+) True XLOC_020196
TCONS_00040165 lncRNA upstream 85712 9351372 ~ 9354371 (+) False XLOC_020196
TCONS_00040181 lncRNA downstream 323928 9782954 ~ 9791367 (+) False XLOC_020205
TCONS_00042067 lncRNA downstream 427719 9886745 ~ 9904498 (+) True XLOC_020211
TCONS_00042068 lncRNA downstream 438945 9897971 ~ 9904623 (+) True XLOC_020212
TCONS_00042069 lncRNA downstream 530879 9989905 ~ 9991494 (+) True XLOC_020216
TCONS_00042070 lncRNA downstream 559874 10018900 ~ 10049233 (+) True XLOC_020219
TCONS_00040171 mRNA upstream 3062 9431853 ~ 9437021 (+) False XLOC_020198
TCONS_00040170 mRNA upstream 7858 9429710 ~ 9432225 (+) False XLOC_020198
TCONS_00040169 mRNA upstream 18906 9418502 ~ 9421177 (+) False XLOC_020198
TCONS_00040162 mRNA upstream 124959 9286489 ~ 9315124 (+) False XLOC_020193
TCONS_00040164 mRNA upstream 134303 9294336 ~ 9305780 (+) True XLOC_020193
TCONS_00040173 mRNA downstream 13788 9472814 ~ 9513061 (+) False XLOC_020199
TCONS_00040174 mRNA downstream 13794 9472820 ~ 9513061 (+) True XLOC_020199
TCONS_00040175 mRNA downstream 63945 9522971 ~ 9538071 (+) False XLOC_020200
TCONS_00040176 mRNA downstream 64469 9523495 ~ 9530774 (+) True XLOC_020200
TCONS_00040177 mRNA downstream 292091 9751117 ~ 9755111 (+) True XLOC_020201
TCONS_00040167 other upstream 56599 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040142 other upstream 653790 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 670690 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040135 other upstream 740850 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040122 other upstream 1174434 8265533 ~ 8265649 (+) True XLOC_020159
TCONS_00040182 other downstream 328041 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040207 other downstream 700132 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040218 other downstream 1035229 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040220 other downstream 1094702 10553728 ~ 10558972 (+) True XLOC_020230
TCONS_00040228 other downstream 1214125 10673151 ~ 10678490 (+) False XLOC_020234

Expression Profile

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