RNA id: TCONS_00040165


Basic Information

Item Value
RNA id TCONS_00040165
length 1619
lncRNA type lincRNA
GC content 0.33
exon number 2
gene id XLOC_020196
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9351372 ~ 9359403 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATAGAGTGGGCTTGCTCTATTTGATGGTAAATATAGTCTGCAAAACTGAAAGTGCAATTTTAAACGTGTTGCGATGTTTAAACCGTGCTTACATATTTATGTACCAGCCGTTAAATCGAGGACATTACAAATtgcaattattgttattttattgattactgtttttattttcaatagtttAATATCGCTAACTATTCTaaacatgtttaattatttatcgTTCTGAACTGTCATGTTATTGATCTCTTTTGCACATCCTCTCCAGTTGTACTAAAGTCAAATTGTTTTCACAAACCAGCGTTGTACGGCATTATGTCAGAGGAGCAAGGAAAAGACTCTTCATTTGAGatttcagagaaacacagTGTAATTTCAGGCTCCCATATGTTCAGCTCTGTGTCTTTGAAGAGTGACCAGTCAATAGATCCACCAGTGAATTTCAGTGAGGAACCACCATTTACCAGAAGGTATCCCACGTGTTCAGATTTATGGCATTGCATTACCTAAATTCTTTAGAGTGTTATAACatgactgaataaaataaaataatcaaactcaGTTCTAGAGCTTTTTCCAAAAATATACTTGCACAAGTATGCACTAGGGGCTATAAACATGAAAAGAAGCTGGGGCCGCTTGCACCAGTAGTGCTTAGATAAAACATAGTCCATTTGTGACATAAAGGGACACTAAGTTACAACAATACacactataaatatatttttgttacaaTACTGAACATTGAATGTAACACTGTTCCAACAATACATTTATGGCAGCCTTTACCCATGTATAATGGTAGACGAGATGACAGTGAGAGTAGATCACACCAAGAAGCTTGTGATAATAATGAAGAACAATGTGACTACTCTCAGCCTTTATGCCCTTCCAAATCTCACATTTTTCAGAGTGTGAAAGAATGGTTTAATTTTCTTTCAAGGAGTGTTTTGTGTGTATCCATCAATTAAAATGAGAATTTCTTCATGACTGAGTTTATTTGCCTGTATTTTTCTCTTTcataaacagttaaagtcagaattattgacccCCTTTTcagcaccattttaaggacaaatctATTACCCCCTATTAGGTATGTTTTGTTTCGATAGACtataaaacaaaccatcgttatacaattacttgcctaattaccctaatctgcctagttaccataattaacctagttaagcctttaaatgtcactttaaactgtatagaagtttcttgaaaatatcttgtcaaatattatttactgtcatcatggcaaagataaaataaatcagttattagaaatgagttattaaaactattatgtttagaaacgtgttgagaaaaaatcttctctccgttaaaaagaaattgaggaaaaaaagttaagcgggcgctaataattctgacttcaactaagcTATTCAAATAATTtcaagtttaatgttttgataagTTAATGTGGATTTCACATTCATTCATGGCTCACATTGCAAATGTGTGCATCATCTGTTGTTACCGACAGATTGTAATgtactataaatatttaatttctcaTTGGAAATGTGTGTTCTCGATGTGTTGTGGTTTGTCTTGTAGCAGTGTATGTAAATGCAaaattttaaa

Function

GO:

id name namespace
GO:0051301 cell division biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194257

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041884 lncRNA upstream 8372 9341455 ~ 9343000 (+) True XLOC_020195
TCONS_00042062 lncRNA upstream 27555 9322757 ~ 9323817 (+) True XLOC_020194
TCONS_00042061 lncRNA upstream 72040 9277024 ~ 9279332 (+) True XLOC_020192
TCONS_00041883 lncRNA upstream 255262 9094008 ~ 9096110 (+) True XLOC_020188
TCONS_00041882 lncRNA upstream 284954 9066086 ~ 9066418 (+) True XLOC_020189
TCONS_00042063 lncRNA downstream 5528 9359899 ~ 9383484 (+) False XLOC_020197
TCONS_00042064 lncRNA downstream 57237 9411608 ~ 9419402 (+) False XLOC_020198
TCONS_00042065 lncRNA downstream 75505 9429876 ~ 9435984 (+) False XLOC_020198
TCONS_00042066 lncRNA downstream 83258 9437629 ~ 9451226 (+) False XLOC_020198
TCONS_00040181 lncRNA downstream 428583 9782954 ~ 9791367 (+) False XLOC_020205
TCONS_00040162 mRNA upstream 36248 9286489 ~ 9315124 (+) False XLOC_020193
TCONS_00040164 mRNA upstream 45592 9294336 ~ 9305780 (+) True XLOC_020193
TCONS_00040163 mRNA upstream 61504 9287929 ~ 9289868 (+) False XLOC_020193
TCONS_00040161 mRNA upstream 72214 9262800 ~ 9279158 (+) False XLOC_020192
TCONS_00040160 mRNA upstream 96084 9239831 ~ 9255288 (+) True XLOC_020191
TCONS_00040168 mRNA downstream 35430 9389801 ~ 9455759 (+) False XLOC_020198
TCONS_00040169 mRNA downstream 64131 9418502 ~ 9421177 (+) False XLOC_020198
TCONS_00040170 mRNA downstream 75339 9429710 ~ 9432225 (+) False XLOC_020198
TCONS_00040171 mRNA downstream 77482 9431853 ~ 9437021 (+) False XLOC_020198
TCONS_00040172 mRNA downstream 85712 9440083 ~ 9459026 (+) True XLOC_020198
TCONS_00040142 other upstream 565079 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 581979 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040135 other upstream 652139 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040122 other upstream 1085723 8265533 ~ 8265649 (+) True XLOC_020159
TCONS_00040110 other upstream 1907167 7443599 ~ 7444205 (+) True XLOC_020142
TCONS_00040167 other downstream 5528 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040182 other downstream 432696 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040207 other downstream 804787 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040218 other downstream 1139884 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040220 other downstream 1199357 10553728 ~ 10558972 (+) True XLOC_020230

Expression Profile

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