RNA id: TCONS_00042067


Basic Information

Item Value
RNA id TCONS_00042067
length 1721
lncRNA type read_through
GC content 0.41
exon number 2
gene id XLOC_020211
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9886745 ~ 9904498 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCAAAAGCAGAAATTATTTCCTTGTTTTATTTACTACTTCAAATTGGTGCATATTGCACTAACAATACAGCATCAGAACTCGAAACTACTTTGCTCTCAGACATGAACTTTTTTTATGACTGTACAGAGTAGTAGAATAAGTAAACCTTTTCCCACACGAATGACACGGAtacggcttttctccagtgtggaccctCTTGTGTATTTTCAGATATTGTAACCGtttgaatctcttgtcgcagtacGAACATTTATAAGGCGTTTCTGTAGTGTGAACTGACTGGTGACCTTTTAGTGCACTAGCAGAATAGAAAGACTTCCCACACTCAGAGCAAGCATGATCCTTCACACCGCTGTGCCTTTTCTGGTGTGATTTTAATCCACTCGTATAacgaaaactcttcccacacaaaTAACACACGTATGGCCTCTCATCTGTGTGAACTTTTCGGTGTTCCCTCAGAAAACTTGGCCTGAAAAAGCTTTTAtcacactgtttacatttatagATTCTCTCTCTAGTATGAGTCAGCAGATGATCCTTTAAAACACTCAATCTtctgaaacttttcccacactgatcACATTTGTGCAgattctctccggtgtggatcttctTGTGATTAGCAAGGCTTTCCCTTCTGGCAAAACTGGCCTCGCAGCGATCACATGtgaacggcttctctccggtaTGGATCGTGCTGTGTGTGTCTAGACCTTCTTTAtttctgaaactcttcccgcactgatCACACGTGTACGGATGTTCTCCTTTGTGAAtcttctcatgtgttttcagataTTGTGACAATTTAAATGCCTTTTCACAGTATGAACACTTATAGGGCGCTTCTGTAGTGTGAACTGACTGGTGCACCTTTAAAgcattatttgtaaaaaatgtcTTGCCACACTTGGAGCAAACACGATCCCTCAAACCTCGGTGTATTTTCTTATGCATATTTAAGGAGGCCATTTtattaaaactcttcccacactgatcaCACGCGTGCGGCTTTTCCCCACTGTGGATCTTTTCATGCAGTTTTACGTATTCTTGCCGTTTGAAACTTTTCTCACAGTGTGAACATTTATAAGGCGTTTCAGAAGTGTGAATAGTTTGGTGcacctttaatgcattttttgtgaAAAAACTCCTGCCACATTTAGTGCAAACGTGATCCCTCACACCGCTGTGTCTTTTCTGATGTCTTTTAAATGCACTTGCATTGcgaaaactctttccacattcaTCACATGTGTACGCCTGGTCTCCGCTGTGAGCTTTCATGTGTGCGCTATAACTTCCAAAATTTGTGAAGGTCCTGTCACACGGAGCACAGGTGTACAGCCTATCcccagtgtggattttcatgtgaaCTTTAAGGCAATCCTTTCTAGAAAAACTCCTTTGACAAAGATCACACgtgtacggcttctctccagtgtggattctcatgtgtaaATCTACATTTTTCTTCAGTCTGAAAGTCTTCTCGCACTGATCACACTTGTATGGCTTTTCTCCACGGTGGATCATCTCATGTATTCGTTGACACTGTAATGATTTGAACGCCTTGCCACAGTCAGGGCATTTGAAAGGTTTTTCTGTAGCGTGAGCTGTGTGGTGGATTTTTAATTGACTGAATGTGAAAAAGCTCTTGCCACACTTGGAGCAGACTTGATTCTTCACAGCGCTGTGTAATTTCcggtgtttttt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00040181 lncRNA upstream 95378 9782954 ~ 9791367 (+) False XLOC_020205
TCONS_00042066 lncRNA upstream 435519 9437629 ~ 9451226 (+) False XLOC_020198
TCONS_00042065 lncRNA upstream 450761 9429876 ~ 9435984 (+) False XLOC_020198
TCONS_00042064 lncRNA upstream 467343 9411608 ~ 9419402 (+) False XLOC_020198
TCONS_00042063 lncRNA upstream 503261 9359899 ~ 9383484 (+) False XLOC_020197
TCONS_00042069 lncRNA downstream 85407 9989905 ~ 9991494 (+) True XLOC_020216
TCONS_00042070 lncRNA downstream 114402 10018900 ~ 10049233 (+) True XLOC_020219
TCONS_00042071 lncRNA downstream 168922 10073420 ~ 10095290 (+) False XLOC_020221
TCONS_00042072 lncRNA downstream 170367 10074865 ~ 10095290 (+) False XLOC_020221
TCONS_00041885 lncRNA downstream 253965 10158463 ~ 10164865 (+) False XLOC_020223
TCONS_00040191 mRNA upstream 6337 9872323 ~ 9880408 (+) True XLOC_020210
TCONS_00040190 mRNA upstream 8376 9871326 ~ 9878369 (+) False XLOC_020210
TCONS_00040189 mRNA upstream 13546 9871238 ~ 9873199 (+) False XLOC_020210
TCONS_00040187 mRNA upstream 18038 9862243 ~ 9868707 (+) False XLOC_020209
TCONS_00040188 mRNA upstream 21477 9862466 ~ 9865268 (+) True XLOC_020209
TCONS_00040192 mRNA downstream 12509 9917007 ~ 9923692 (+) False XLOC_020213
TCONS_00040193 mRNA downstream 14374 9918872 ~ 9923691 (+) False XLOC_020213
TCONS_00040194 mRNA downstream 17803 9922301 ~ 9923218 (+) True XLOC_020213
TCONS_00040195 mRNA downstream 35403 9939901 ~ 9945637 (+) True XLOC_020214
TCONS_00040196 mRNA downstream 76581 9981079 ~ 9984032 (+) True XLOC_020215
TCONS_00040182 other upstream 96941 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040167 other upstream 503261 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040142 other upstream 1100452 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 1117352 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040135 other upstream 1187512 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040207 other downstream 254660 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040218 other downstream 589757 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040220 other downstream 649230 10553728 ~ 10558972 (+) True XLOC_020230
TCONS_00040228 other downstream 768653 10673151 ~ 10678490 (+) False XLOC_020234
TCONS_00040250 other downstream 1758119 11662617 ~ 11674637 (+) True XLOC_020251

Expression Profile

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