RNA id: XR_002475631.2


Basic Information

Item Value
RNA id XR_002475631.2
length 2554
RNA type mRNA
GC content 0.54
exon number 5
gene id LOC110537474
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 33501934 ~ 33513654 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACACTTCCAGGAAGTACAGCCAACAGGGTAGAAAGAACGGGTCTGTAGCCCTGCTCTCCAATTCAAAACCTtcacaactttatttaaccaatgCAGAAAACACACTTCTCTATGGGGACAGAGTGGGCATTGGGCTCAGGACTAAATCTACCTGGAAAGGGAGTAATAAGAGAGGGTGAGCTACTACAACACCAGTGGTAGAGGGGAAGGAAGAAGGAAAGAACTGGAGGACTGTCAACactggggagaggggaaggaagaaggagagaacTGGAGGACTGTCGACactggggagaggggaaggaagaaggagagaacTGGAGGACTGTCGACactggggagaggggaaggaagaaggagagaacTGGAGGACTGTCGACActgggagaggggaaggaagaaggagagaacTGGAGGACTGTCGACactggggagaggggaaggaagaaggagagaacTGGAGGGCTGTCGACactggggagaggggaaggaagaaggagagaacTGGAGGACTGTCGACActgggagaggggaaggaagaaggagagaacTGGAGGACTGTCGATactggggagaggggaaggaagaaggagagaacTGGAGGACTGTCGACactggggagaggggaaggaagaaggagagaacTGGAGGACTGTCGACactggggagaggggaaggaagaaggagagaactggaggactgtcaacactgggagaggggaaggaagaaggagagaacTGGAGGACTGTCGACactggggagaggggaaggaagaaggagagaacTGGAGGACTGTCGACactggggagaggggaaggaagaaggagagaacTGGAGGACTGTCGACactggggagaggggaaggaagaaAAAGAGAACTGGAGCAGTGAGTAGGAGCATCTTACCTCTTATTAATGGGCTTCTCATCCTTCTCGTAGGGCTTGACGAACCACTTGCCAATGCGTACGAAGCTGCGGTTCATGAGACAGCGCTCCAGCAGGTTGTGGATGGCTTTGAACAGGAGCGTCCTGCACTCATAGGACAGGCCGCTCTCCCACACACCGTCCTCCTCAGCTAGATAGACAGACGGACGGAGAAAGACAGGATGACATCATGTGACTAGTGAGGTCTGGCCGCCCTGACAACCTACCCGCTCGACCCCagcccctcctcccttctccagacctctctggagaccttctcccattcctcatcaCCTCATCCTTGACCACTGGCTGTGTCCCCTCTGACCCAAgttgctcccctcctcaagaaatcAACACTCAACTCATCTGAGatctatccgctgccttTGACGCTGTGAACCATCAgattctcctctccaccctctcagggctgggtgtctcaggctctgccCACTCTTGGGATGCATCCCATctggcaggccgctcctaccagGTGGCGACACGCATCTCTATCTCAACTTGGATGTCGACCCACCACCTCAAGCTTAACCTCAACGGAACTGCTCTTTCTCCCagggaaggcctgcccgctcaaagacctctccatcatggtTAACAACTCCAGAGTGtcgccctcccagagtgcaaagaccCTTAGAGTTACCCTGGATAACACCCTATCATTCTCtccaaacatcaaagcagtgacccgctcctgcaggttcatgctctacaacatccgtagagtacgaccctacctcacacaggaagaggcaaGATCCTAATCCAGGCCCTTATcttctcccgtctggactactgcaactcgctgttggctgggccccccacttgtgccatcaaacccctgcaacttatccagaacgctgaagcccgcctggttttcaaccttcccaagttctctcatgACACCCCGCTCctctgcacactccactggcttccagtcaaagctcacatccactacaagaccatggtgcttacctacagaaaagcaagaggaactgcccctccctaccttcaggctaacCCTACACCCCCACCCGAGCACGCCAtctgccacctcaggtctcttggccctcccacctctacaggagggcagctccggctcagcccagtccaatctcttctctgtcctgacaCCACTATGGGAGGGCAGCTcgcgctcagcccagtccaagctcttctctgtcctgtcaCCTATATAGGAGGGCaactcccgctcagcccagtccaagctcttctctgtcctgacaCCCCTATGGTGTAACCAGCTTCCCCTTGAAGCTaagacagcagagtccctgcccatcttccaaaaacatctgaaactCTGAAACATCAAACACCCCCTTCTAGCTTAGACTCTACTGAAAAAATgtactttctatgcctgtgatatgtttGTCCCACTTATCTTATcccagctatcttaagatgaatacactaactgcaaacacacacacacacacacacacaggtgtttgtGGGCCCATTCCAGCAGTGTTTGTTTATGCTAAGAGGTGAATGTAAGAGGGCATGGTTTTGGAGGTGGTCAGTCCCTCCAGTCACAGGTGTCTATGCTCTGGTAATTAAAGCTGCAGTCGGTAGCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1210357 lncRNA upstream 7624 33494023 ~ 33494310 (+) True G1062525
TU1210356 lncRNA upstream 8956 33492632 ~ 33492978 (+) True G1062524
TU1210350 lncRNA upstream 13847 33487831 ~ 33488087 (+) True G1062521
TU1210349 lncRNA upstream 14128 33487478 ~ 33487806 (+) True G1062520
TU1210346 lncRNA upstream 17299 33484318 ~ 33484635 (+) True G1062517
TU1210460 lncRNA downstream 20890 33534544 ~ 33534806 (+) True G1062615
TU1210478 lncRNA downstream 47596 33561250 ~ 33561701 (+) True G1062633
TU1210481 lncRNA downstream 54525 33568179 ~ 33568403 (+) True G1062636
TU1210494 lncRNA downstream 59896 33573550 ~ 33657966 (+) False G1062647
TU1210495 lncRNA downstream 59896 33573550 ~ 33657966 (+) False G1062647
XM_036937414.1 mRNA upstream 886944 32555056 ~ 32614990 (+) True cxadr
XM_021622431.2 mRNA upstream 947278 32547321 ~ 32554656 (+) True btg3
NM_001165080.1 mRNA upstream 947281 32546918 ~ 32554653 (+) False btg3
XM_021623530.2 mRNA upstream 967248 32504245 ~ 32534686 (+) True LOC110537469
XM_021623529.2 mRNA upstream 1030563 32458471 ~ 32471371 (+) False LOC110537467
XM_021623543.2 mRNA downstream 85285 33598939 ~ 33624023 (+) True rnft1
XM_021623550.2 mRNA downstream 269160 33782814 ~ 33784617 (+) False ptrh2
XM_021623551.2 mRNA downstream 269215 33782869 ~ 33784617 (+) True ptrh2
XM_021623555.2 mRNA downstream 359361 33873015 ~ 33877401 (+) False LOC110537484
XM_036937427.1 mRNA downstream 359363 33873017 ~ 33877401 (+) False LOC110537484
TU1210205 other upstream 135685 33359734 ~ 33366249 (+) False G1062404
TU1210206 other upstream 139329 33359734 ~ 33362605 (+) False G1062404
TU1208110 other upstream 1690587 31811062 ~ 31811347 (+) True G1060470
TU1207289 other upstream 2292577 31207629 ~ 31209357 (+) True G1059685
TU1206610 other upstream 2494868 31000227 ~ 31007066 (+) True G1059091
TU1210496 other downstream 144624 33658278 ~ 33661949 (+) True G1062648
TU1211387 other downstream 1253370 34767024 ~ 34770876 (+) True ubb
TU1211541 other downstream 1462638 34976292 ~ 34981964 (+) True LOC110537506
TU1212928 other downstream 1956846 35470500 ~ 35471382 (+) True LOC110524522
TU1212912 other downstream 1974084 35487738 ~ 35488944 (+) True G1064849

Expression Profile