RNA id: XM_036937902.1


Basic Information

Item Value
RNA id XM_036937902.1
length 4447
RNA type mRNA
GC content 0.48
exon number 19
gene id sez6l2
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 59233354 ~ 59343106 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACTGTTCTCTTTGAAGTAGAAGAAGAATCGATATCAGTTTAAAGACGTGTaagcagaatgaaggctgagccAATGTGAGTGTACAAAGCTGGATCAAGATCGAGTCAACTATTAGACATGTAAAAAAACAGAACGTAAGCAGAATCTGTGTGGATGAGGCAAGGTAGACCAACAAGACTTGACTGGTCTGGGCCATATCTGATCTTGTGAAGGCTACTGGACATGCACATGGGTTAATCATATACAGACAACATCGGCCTGAACTTGTGAAGACCTTTGGACAGGAACATTAGATAATCAGTTATAAGCACCAGCAGGAGTGTGCATGTCACACCACCAATAGAATCTATGCACCAATGTCTGAGTGAATAAGAGAATGGAAAAAAAGATTCGTAACAAGATTCGTAAAGTGGAGTGACGATGTTATGTAAGGGCTGTTCTGATACTAAACCATGGTGTCTACAGTTCTTGCTGTGACACTATCTGTCACCATCCTCCACCTAActacagGCTTGAGCTTTGTGACCCCTGACCCTGAGGCTCCTCCCACAGCAAGTCCTGGTCCCCATCCATTGGGCAAGCTGATCCATGCAGCCCTTCTGAGTAAGGAGTACCTGGGCCACCCCCCAGTTGATACAGGTACAACCACCAACCCTACTCAGGCTGTACCACAGCTTGGGCAGACTGAGCCTGCAGCCACTGTGATGCTACCAGGGGTGCTAACTACGGCCCTGACCTCATCGCCTCCAGTTAGCCTATCAGGAGCAGGGAAAACTGTAACATCATCACCCACAGAGGAGGAGACGACAACCACTTTGATCACCACAACGACCATCACCACGGTGCACATGCCGGTGCAGTGCAATGCCAGTCTCTCTGGGATGGAGGGCATTGTGGAGTCTCCagatcctctctcctcatccccttaCTCTCCTCTGGAGTGCACCTACAGCATCACAGTGTATCCGGGTTATGGAGTGGAAATTCAGgTGAAGAAAGTGAAACTGTCCAAGGACGAGTCCCTGACTATCCTTGGCTATGGAGGGACGGGACCAGAACTCTTAGCCAATGAGACCCTAATGAGTGAGGGTCAGGTGATTCGAAGCTCAACCAATCAGGTGCAGATTTACTACCGCAGTCTCCGGCAGACCGATCATGGCATGTTCAGCCTACACTATCAAGccttcctcctctcctgctcaTTCCCTCTTTCTCCTGGGGGAGGGGGTGTGACAGTAACGGACATCCACCCCGGAGGCCAGGCCCACTTCCACTGTGACCCTGGCTTCCAGGTCAGGGGCCACGAGGTAGCCACCTGCTTGAACATGACTCAACCTCATTGGAGCTCTCCTGAACCTCAGTGTGTGGCTGTGTCATGTGGAGGGTGGATCCGAAATGCGACCGTGGGTAGAATCTTCTCTCCGCCTCCTCCATCTGCGAGTAACCACAGCAACGGCAATAATCTGAGCTGCCATTGGCTACTGGAGGCCAGGGAGGGACACAGGCTTCACCTCCACTTTGAGAGGGTTGCGCTGGACGAGGATGATGATAAGCTGATTGTGCGCAGCGGAAACAACTCCATGTCTCCCCTGCTCTTTGACTCAGACCTGGACGACGTGCCAGAGCGTGGCATCGTGAGCGAGGGCTCCATACTCTACCTGGAGCTCACGGCCGACTCCTCTTCCATCCCGTTACTACTAGCTCTGCGCTATGAGGcctTTGACGGGGAACACTGTTATGAGCCCTACTTGCCCCATGGGAATTTCAGCGGCAGTGACATCACCTTTCCGTTGGGCACCACAGTCACCTTCTCCTGCTCCCCGGGCTTTGTCATGGAGCAGGGCTCTGGGGTCATTGAGTGTGTGGACCAAAGCGATCCACACTGGAATGAGAGCGAGCCTGTGTGTAAAGCTTTGTGTGGGGGAGAGTTGACCGATCCCTCCAGTACTGTTCTGTCCCCCGATTGGCCACAGAGCTACTCCAAGGGGCAGGACTGTGTGTGGCAGATCCATGGCAATGAGGAGAAGCGCATCGAACTGGACATCCAGATTTTGAATATCCGCCACAACGACGTTCTCACCATATTCGATGGTCACGACCTCATGTCCCATGTGATTGGCCAGTACCTGGGGTCACGAGAACGTTTCCAGGTCGTGTCAGGTGGTTCTGAGGTCACTATTCAGTTCCAGAGTGACCCTGACGACTCCTCATTTATTCTCAGCCAGGGGTTCCTTATTCACTACCGTGAGGTAGAGCCTAATGACACCTGCCCTGCCCTCCCTCAAATCGAATTTGGCTGGATTAGCTCCTCCCACACCTCTCCCGTGAGGGGAAGTGTGTTGACCTATCAGTGCCAACCGGGGTATGACATCAGTGGCTCTGACATCATCACTTGCCAATGGGATCTTTCCTGGAGCAACAGCCCACCCACCTGCATCAAAGTCCAGCAATGTCCTGATCCGGGGGAGGTGGTGAACGGAGCGCGTTCGGTACGCCCAGAGTCTGGATTCGCTGTTGGAACAGTGGTACGCTTCTCCTGTAACCAGGGTTACCAGCTGGAGGGCCCTGGCCAGATCTCCTGCCACGGAAGGGATACAGGCACCCCCAAGTGGAGTGATCGCAGCCCCAAATGTGTCTTGAAGTATGACCCATGCCCAAACCCAGGTGTGCCAGACAATGGTTACCAGACATTGTACAAGCATAGCTACCAGGCAGGAGAGACGCTACGTTTTTTCTGCTATGAGGGCTATGAACTCATTGGGGAGGTTATTATCAACTGTGTTCCGGGCCACCCATCTCAATGGAACAGTCCACCACCATTCTGCAAAGTGGCATACGAGGAGCTGTTGGACGATCATAAATTAGAAGTATCCCAGTCATTTGAGCCCTCCCACCAGATGCTAAGTGAGAACATTGCCTTGGCAATCATCCTGCCAATCATCCTGGTCATCCTTCTGATTGGTGGAATCTACATGTATTACACAAATGTATGTAGACTGCAGTGGAAGCCACTTTTCTggaagtctctctctcacacccactcATACAGCCCAATTACTGTGGAGTCTGACTTCAACAACCCTCTATATGAGGCAGGGGACACACGGGAGTATGAGGTGTCCATTTGAAGAAGAAAAGTCTTGAGAAGAATGAAAACCCACAGATAGATAGAGATCTGGAGGAAGAGGAACCATTTTCTTTGTCTTTCAGATGACTTCTTTCACTTCCCTCATTTCCCATTCTGCTATTTCCTCTTTCTTGCCTCTcacttttgttctctctctttatctttgaGTTTGTGTCTTTACAcctaatttttattttgtttgtgtCTCTAATTTCCCAGTCGCTCTTTCTGTCAGTGATTGTAGGTTTGCCCTTCCTTGGGCCAGATTCAATCCGATCGTGTTTTGTCCGCTATGCAAAACAAtgttaaaggcaatgttccagcgCTAGTGGAGACGACATTCACGGTAAACTCTGCATATGTCAGTtcaattggaaattacctttaaatgttgCACTTTAACGTGGATTTTCCACGGCCCAGATTGAATCTAGGCCCTTGTCTTCATCTGTTCATTGTGTGCAGCGATGACTCCCAGTCTCCCAGTGGTGTGCTGTTTTCCACAGTCCAACTTTTTGTCTAAAATTAGGATTGGTGCCTTACAGAGGTTAAGCGATGGATAATatggaaggagagacagaaaaaggGAGAGCTGAGATATATTTATGAGGTAAAATCACATAGAGAGAAACAAAAAAGTAAAGGGAGAGACAGGAAAGCAGACACACTCTCATGCTCAGTtgcacacagtatacacacacagacacacagagagagaaagagagagagcgagagagatgcatACACACATTGAATGTAAATATTTGGTGGAATATTGAGGCTCATATATACAGAAAATTCAGTGCCAAAATATAACATTGCATAATGTAATGTAACTTCATGTTTCAACTCTCGTTTCCATAGTAAAATGTAAAATTACAAAGCCAGCATTTCATATTGTTCTTTGCCATTTCTGAAGTGTATTTCCACTTGACTGAGAAAAAGGTGAAGACCTGAATGTTGTCACGCTTATAGCACGCGATGATTGTATATTTTACCGCTTCTGCTGAATCATGTTATGATTATCAACGATTATCATTGTTATCAGTGCAAATTTGAAGATGTTGTATATGCACTATGTTGAAGAAAATAAGCTAACTTGGCTGCTTGCTGTGATGCAGTATTTAACTGACATGCTTTTTGAATTTCTTACCAGTTTATTGTCTGAACAGTAAATCTAATTTAATTCACTGTGCCAATATAGGGGTCCAGGAGACTCTTTTGCATTGTAAAGGTATTATTTGCATCATAATTTGCCATGAAGGCATTATTTATTTGCTGAAATGTCATATTAAATAAAAGTCTCTGAATGGTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1244054 lncRNA upstream 20367 59211790 ~ 59212987 (+) True G1093874
TU1244000 lncRNA upstream 89843 59143278 ~ 59143511 (+) True G1093823
TU1243997 lncRNA upstream 100878 59132186 ~ 59132476 (+) True G1093820
TU1243987 lncRNA upstream 114425 59118722 ~ 59118929 (+) True G1093810
TU1243894 lncRNA upstream 246150 58986447 ~ 58987204 (+) True G1093719
TU1244158 lncRNA downstream 160310 59503416 ~ 59503617 (+) True G1093974
TU1244163 lncRNA downstream 172935 59516041 ~ 59516951 (+) True G1093979
TU1244187 lncRNA downstream 234274 59577380 ~ 59577673 (+) True G1094003
TU1244193 lncRNA downstream 243360 59586466 ~ 59587553 (+) True G1094009
TU1244194 lncRNA downstream 248605 59591711 ~ 59593406 (+) True G1094010
XM_036939515.1 mRNA upstream 127348 59052329 ~ 59106006 (+) True LOC110537871
XM_021624305.2 mRNA upstream 258218 58961767 ~ 58975136 (+) True LOC110537870
XM_021624301.2 mRNA upstream 274120 58935530 ~ 58959234 (+) False LOC110537868
XM_021624302.2 mRNA upstream 276226 58935535 ~ 58957128 (+) True LOC110537868
XM_021624299.2 mRNA upstream 315945 58875401 ~ 58917409 (+) True LOC110537867
XM_021624316.2 mRNA downstream 7673 59350779 ~ 59389927 (+) False kctd13
XM_036937905.1 mRNA downstream 22527 59365633 ~ 59389927 (+) True kctd13
XM_021624324.2 mRNA downstream 55629 59398735 ~ 59422218 (+) False hirip3
XM_021624321.2 mRNA downstream 55651 59398757 ~ 59422218 (+) False hirip3
XM_021624322.2 mRNA downstream 55656 59398762 ~ 59422218 (+) False hirip3
TU1241903 other upstream 1011164 58216155 ~ 58222190 (+) False LOC118937686
TU1241907 other upstream 1318522 57899471 ~ 57914832 (+) True LOC110537841
TU1241421 other upstream 2115427 57115825 ~ 57117927 (+) True LOC110537831
TU1241171 other upstream 2480407 56752418 ~ 56752947 (+) True G1091235
TU1241153 other upstream 2507351 56725607 ~ 56726003 (+) True G1091217
TU1244093 other downstream 198452 59541558 ~ 59542603 (+) True G1093909
TU1244425 other downstream 687897 60031003 ~ 60034020 (+) True G1094218
TU1245603 other downstream 1042558 60385664 ~ 60385973 (+) True G1095244
TU1245572 other downstream 1353581 60696687 ~ 60714012 (+) True LOC110539079
TU1245566 other downstream 1473385 60816491 ~ 60818897 (+) True G1095209

Expression Profile