RNA id: XM_021624375.2


Basic Information

Item Value
RNA id XM_021624375.2
length 5779
RNA type mRNA
GC content 0.56
exon number 9
gene id scaf1
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 60576961 ~ 60596221 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agcctggattcgaaccagcctcaagcactgaaatgcagtgcctaagaccgcTGCAATTATTTGTTATAATAAAGGCTTGATATTCAGTCATCGAAACGTGAAAAAATATAATCTTCAGTAATAAATACACATCTAGATGTATAGCCGGGAAAAGTATTTATTTTGTTCAGGATCTTTCAAATAGCATTTGGAAGGTTGTCGTACCCAACATTAGCCCGATCAACGAAAAACTTAATTTCCCGTCGGCCCTTGTTGACCGGTTTCAAGTGAAGGGAAGTAAAATGTCGGCGATGGATGGGATGGGCCTCTTATTGTGCTTTTAAAATAACAATATCTCAACCTTTAATACTGTATTTTAAACGTAAATTTAATGTTTTAGAAAATAAAGGGTAGTTGAAGATTGTGGATTTACACGGACAAAACATATAACTGGATCTAAGGAATTTAGCGCATGTATTTGACTGGTGTAGCTAGGAGACAGAGAAAGACTCCAGCGAAGAGGAGACAGATAAGGATGAAGAAAGGAGTAGGACGAGGTTGAGGTGTTACCAATTGCGATAGGGAGAGCCCAGATGACGAGCCTAGCGAGCTGGGAGCTGTCATTACTGCAACCCCCGAAACGCTTCCCTGCCTGGTCTATCTTCACTGCTCTCCACAGCATCTCCTTGATAGTTCTGACCTTGAAGTGGAGTTGACAGCTGAGGTGAGAGTGGAAGGCTCGTCACTGCTCAGTATCTTGTCCACTGTCACCGCTGGTATAGGCAACAGGAAGTCAGGGTTGCTCTTTTATCCCCGGCCCTCAGCATCCCTCCTCCAGCCACAACCCCAGGCTCCAGGGAGTACTGACTGGACTGCAGCTTGCCCCAAGCCCAGCTCACATCCTGGCCATGGATTTAACTCGAATCCCAGACCTTAAAGGGGTGCCTGCCGTCCCTCCTCCTCATGGGATCATAGAGACTGCCAAGAGCCCCCtgccctcctccacatctccctcctctccttcctcctctcctgcctccccaccttcctcttcatcctcctctcctggAGCTGTGGCAACCAGCTACCACAATGACATCCAAGAGGGAAGGGCCAACAGCGTGATGATGGGTGACGTAGTGTCCTCCACTTCCGCTTCCCtggctcccccctcctctctcgctgacccccctttctcctcctctgatCCCTTGTTatgtctctccccaccccctgttgGCACCGACGGACAAAAAGAGGACGAGACGGAGATCTACGACCCTTTTCACCCcacggaaggagagagggagggaggagcggccgaggaggaggaagaaggggaaAAGTACGATCCCTTTGATCCGACCGGCTCTcccccctcagagagagaggaggaggagcgagcaatggggggagggagggagagagggaacagcgtGAGCAGCAAGGGGAGTGATGCCAGAGGGAAGAAAAGGAAGGCAGAGACTggggggacaggaggagaggagaaggacaaTGCTCCTCCAGACTCCACGGACACTCTCTCTGTTCCCCCGCTCTCCCCGCGCTCCCTTCCTCTACCCCTCCGGAGGAGGCTGGACCGAACCAAAGAGCCCCGGGTGAAAGTacgggacaggagagagaaggcgGACCACTCGGACCACTCTGAAATTGAGGAGGGTGAGATCGTGGGGGCCACCGAGAGGGACGGAGggaatagggaggagagaggccgGGAAGGAATCGTTCCTCTcgtcctccccatctcctccggCAGTCCTTTCCTCCACGGGGGAGCTAAGCCGGAGAGGATCCTGAGGGTGTTGGATGGGGATAGCTTTGTGTCGGTGCGGGCTGATGGGGACTGGGCGGGGCCGGTGATGCCTGGCAGGGAGGATGGGGAgcccatggaggaggaggaggaggaagaagaagaagaggaagaggtggtGGTCGGGGTGGGAGATCTTAGGAGGAAGCTGGTCAGCCGGCGTAAGGCGAGATACcgttcctccttcccttcttccctctcacCTCAGCACCTCCCATCGTCTCCTCACACCCTCCTtctgcctccccctcctccctccactgctGAGAAGGACAAGAGCCGCAAGTCCTCCAAGAGTTCCAAGGAGAGGGAGCGGCGCAAGCGGAAGGAGGGAAaggtaggggaggaggaggaggagagtaggaggaggaggaagaaaaggaaagagaaggattgcggaggagagaagagtggtgagaggaaggaaagacacagggagagggggcggcggagtgagagagagaagaaaacaaaggtggaggagagagggaggagcagcAGAAGCGATAGCagaaagaggaagaagagacGATGGAGCACCCCGGAATCTTCAGCACGCCCCCGCTCACAAAACTCCTCAGTGCGGCAAATACGCGGGGGTCGCTCCTGGTCAAAAACTTCAGAGGaccaacatagagagagagatagggacatagacagagagaataacagagacCGGTACAGAGACCGAGATGTGGAACAAGATGGAGATCGAGACAAGGACAGAAAGAAAGATGACACCCggagaagggagagggatagagactcGAGCCGgataaagagggaaagagagcgagacggcATCCGCGAATCGACCAGCCGAGAAAGAGGCAGCTCCAAGAGGTCTAAAGGAAGCATAGAACGAAGGCACCGGGACAGGCACCGGGACAGGCAccgagaaagggacagagacagagaaagggacagagaaagggacagagaaagggacagagaaagggacagggacagagaaagggacagagacggagaaagggacagagaaagggacagggtcaGAGAAGGGGACAGGGTCAGAGAAGGGAACAGGGAAAGACGTAGAGACGGTCGTCCCGTGGTGCCACCGTCCATCCAGGATCTCAATGGCTCTGACCTGTTCGCCATCAAGCGCACCATCACGGTCACcacgaccaccaccaccactctcccCGGTTCCCCCCCGCTGGCTCCATCCTCCCCCCACAGCCCCCCCCAGGGCTCGGACAAGCCCCacaagaggaagaagaagaggcgTCGGCGCTCGGACGAAGAGTTAGAAGAAGGCATGGGCCGGCGTGGGAGCCGCTCCCTCTCGCCGCCGTCACATTACCATAGCTATGACTCGGACCACTTTTCAGACAAACTGGAGATAAACATGCACTCTCTGGACGGGGAGGCCCTGGACTCAGACTACCCCTCTATAGAAGactccccaccccctccccagCTTCTGGAACCCGCTGCCCCCAGCGCCAAACCCAAGACTGCCACCAAACCTGGACGCCACCACTTCAAGAAGAAATCCCGAACGGGCAAGAAAGCTGGTCAGTCCGAgtcgtcctcttcctcctcggttCGACCCAAAGGCAAGGGTCTCTCCACTGCCTCACTCTCCCCAACCCAGGCCGCTCTAGCCACCCTCCCCTCGGCCAAACGAGGGCGGAAGATGGGGAAGGAGAAAGATCGTggggaaaaagggggaaagagagagtctgGTCGGTCTGGCAGGTCCAAGAAATTAAGCGGTGGTGGGAGGAAAGCCAAGCTGCAATCCAAAGTGTCAGTGCTTGTGCGTGAGGGCGTGAGCAGCACCACGGGGGGCCCAGTGGGCTCTGGGAAGCTGGGCATGGATCTCCTCGGGGCAGGCGGGTCAGTAGGGGGCTCTGGTATGCCGGTGGTGGGAGGTTCCATTGCGGTGGTCTTTAGGAGGGACAATGAGAGCAGGTCTCCGTTCCTCAAGCCCTGCTCTGAGCCTCTATTGCTGAGTGGACGCAACAAGGACCTGGGGAAGGTGGGCAAACGCAGTTCCTTGGCCGCTCCCCCTTCCTCCTCGCTGGCCAATCCCACGGTGGCAACACTGAAGTCCAAGAAGGCCAAGCCCAGCTCCAccacctccacttcctcctcggCGTCTTCGCCCTCATCGTCCCTGGCAACCAAGCGTAGGCGGCGGCTGGCGAAGAAGACGCGGGGAGAGAAAAGCTTAGCCGCTGGTTTGACGGACGTGGATGGCGCCATGGCCAACTGTAGCTCTGAGGGCGGCAGCTGGGGTGGACCGTCCTCCGACATCCAATCAGGAGTCGGGACTAAACCATCCAGTCCACACTCTGGTCCAGCCGGTCCaaccccttcctcttcctcttcttcatcaTCTTCCTCTTCCACCAGTGTCCTCCCCCCGTCCTCCTCACCCCCCCAcacccctccaccctccttcaCCACCTCGCGTGATGCTCGGGAGTCGTCTCCCGACTCGCAGACTGTGGACAGCAGCTGTAAGACCCCTGAGCCCTCCTTCCTATCCGAGGACTGCCCCGCTCAGACCCAGAGCACCCCCAACCTGCCCCCCTCCAGTCCCACGTCTGTACCATCCTCCCAGGGGGGAGGCATCTCACAATACGGCCCCTCCAGCATAAAGCCCCTCCCTCTGGAAGAAGCCTCCAAATCCCTGGCCTCACCCCCTTGCTCCTCCTCATCTGGCTCtgccctcgcctctctctcccttcctccttcctccacagacccctcctcctcttcctcttcttctgtttcttcaTCCTCAGCCAACAAGCTGCCAccgcctcctcctccccctcctgctGCCCCTACCCTCCCCTGGAGTCTGCAGACAGGAGTGGACTGCACAGCCGGAGGAGTTTTAGCATTGACAGCTCTGCTGTTTAAGATGGAAGAGGCCAATATCGCAAGTAGAGCCAAAGCCCAAGAGTTCATTCATGCTAcaagccagatTCTCTCCCAAACCAATCAGAACCATTCATCGCAGCATGccccttcctcttcttcctcctcccagGTTCCTCCCCCTGGCCCCACCCCTGCCCAGTTCATCCTGCACAACTCTCTCCCAATGGTGGGCTGCACCAAAACCACGCCCAGCCACCTGCACCCTGGCATGTCTATGGGTGGCGGCTGCGCCCAGACCCCGCCCCCTCCCATGCCCTCTGGGTTCTCGGGAGGGTCCGGGGGCTCCAGTGACATAGGCTGGGACAACGAGAGCAAGGACCCTGACAAGtacCTGAAGAAGCTCCACACTCAGGAGCGTGCGGTGGAGGAGGTGAAGCTAGCCATTAAGCCGTACTACCAGCGTAAAGACATTAACAAGGACGACTACAAGGACATCCTGAGGAAGGCAGTACACAAGATCTGCCACAGTCGAACGGGAGAGATCAACCCGGTCAAGGTGAGCAACCTGGTCAAGCTTTATGTTCAGAGGTACAAGTACTTCAGGAAGCACGGTCGAAAGATGgacgaggaagagagggaggacagagagatggattCCTCCTATTGATTGGACCAGGGGTCGCACTCCCCCTCCTTCCATTGGTCCTGCCACCCAAGGACCAGCCCCGCACTCCTTGCACGTGACTGGGCCCAATGAGGCCGTAGAGTGACATTTTGTTTTATTCCCCTCCCTATTTGCTGTCCCCATGTAAACTCGTAACACCCACCCCCCCGTCTCCTGTGTGTCTTGCTGTACAGAAATGTTGAGTAGATATCTGCGAAATATACACACGCAGTATATGAattttttaaaaagtacaatGTTGTGGGAGAGATTGCAGAATACATGTATACACACTTacacatgcgcgcgcacacacacactgtatatactgtaagtaCACTACActgactctctcctttctctgtgtgGTATAAACCTGTCATAGTCAGGTGGTTGGTCTGTTGAATGGATGGATGGTTTAAATATAGAGATTTGACACTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1245700 lncRNA upstream 308 60576422 ~ 60576654 (+) True G1095340
TU1245695 lncRNA upstream 7117 60569605 ~ 60569845 (+) True G1095335
TU1245693 lncRNA upstream 8610 60568081 ~ 60568352 (+) True G1095333
TU1245692 lncRNA upstream 8894 60567838 ~ 60568068 (+) True G1095332
TU1245689 lncRNA upstream 10717 60566017 ~ 60566245 (+) True G1095329
TU1245781 lncRNA downstream 183042 60779263 ~ 60779496 (+) True G1095413
TU1245815 lncRNA downstream 228496 60824717 ~ 60824999 (+) True G1095438
TU1245817 lncRNA downstream 238053 60834274 ~ 60834565 (+) False G1095440
TU1245822 lncRNA downstream 238053 60834274 ~ 60834478 (+) True G1095440
TU1245839 lncRNA downstream 256223 60852444 ~ 60854828 (+) True G1095449
XM_036937942.1 mRNA upstream 32933 60513247 ~ 60544029 (+) True prr12b
XM_021624373.2 mRNA upstream 65662 60501702 ~ 60511300 (+) False prrg2
XM_021624371.2 mRNA upstream 76469 60482890 ~ 60500493 (+) True LOC110537905
XM_021624370.2 mRNA upstream 94941 60478445 ~ 60482021 (+) True si:ch211-195b15.8
XM_036937941.1 mRNA upstream 113267 60415044 ~ 60463695 (+) True ap2a1
XR_005035052.1 mRNA downstream 29374 60625595 ~ 60687760 (+) False trpm4a
XR_005035053.1 mRNA downstream 29375 60625596 ~ 60687760 (+) False trpm4a
XM_036937947.1 mRNA downstream 29376 60625597 ~ 60688115 (+) False trpm4a
XR_005035054.1 mRNA downstream 29377 60625598 ~ 60687759 (+) True trpm4a
XM_036937948.1 mRNA downstream 100391 60696612 ~ 60777061 (+) False LOC110539079
TU1245603 other upstream 190989 60385664 ~ 60385973 (+) True G1095244
TU1244425 other upstream 542942 60031003 ~ 60034020 (+) True G1094218
TU1244093 other upstream 1034359 59541558 ~ 59542603 (+) True G1093909
TU1241903 other upstream 2354772 58216155 ~ 58222190 (+) False LOC118937686
TU1241907 other upstream 2662130 57899471 ~ 57914832 (+) True LOC110537841
TU1245572 other downstream 100466 60696687 ~ 60714012 (+) True LOC110539079
TU1245566 other downstream 220270 60816491 ~ 60818897 (+) True G1095209
TU1245870 other downstream 358479 60954700 ~ 60965595 (+) True mmp25a
TU1245937 other downstream 441518 61037739 ~ 61352345 (+) True G1095540
TU1246640 other downstream 1850283 62446504 ~ 62447474 (+) True LOC118937701

Expression Profile