RNA id: XR_005035054.1


Basic Information

Item Value
RNA id XR_005035054.1
length 4484
RNA type mRNA
GC content 0.54
exon number 25
gene id trpm4a
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 60625595 ~ 60688115 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTGGACATTCTTTCCTGCATGCCCTCCCTTCCCAAGTAGCTTAACCCTTTGGCCTCCTCCCATAGGCCCTACCATTTCTACACCGTGCCTCgaacatactgtacatcttcCTGGCAGATGGGCTCGGGTATAGGTATATCTATCTATTCACAGCACCAGCGAGCTATGTACACTTCTTGAGATAGATCCTTGTGACTGGTTGTGGGCAGAACGCAGCGCAGCCGGAGGCAGCTACTCCAAATAGTTTTACATCGCTCTGTCTGCAGTGCACATCCAACAGTGAACCTCAAAACTTCAAAATGGGGTTTTAGCTGTTTCTATATCGACGTCGGACCTATTCGAGAATTATTTTAGCCGCTTGCCGGAGAAGGGCAGAGAGGGGATAGAGTGTGTAATGAACGACACGGATAAAGAGCATGAAGGAGGCAGAGGGAGAAGGGAAACAAGAAAATCCGAGAAAGATCAGGTTTGGCTCATCTATTATAAACACGTAGTTGGATCTCCAAGATCATCAAGAAGAGAGTGTGCACCACATTCATAGAGGACTGCCTTAGTAATGGGGCGCTGTGCCAGTGCGGGGGTGAGCGTGAAACGCACGGCTCCATCGCTACGAGAGACTATTTCGGTGCAGCCATCGTCAGCCAGTGGGATAGCTCTCAGCACTCCTCAGAGTACCCCACTGACGCCTTCGGAGAGTTGGAGTTCGCAGAGGCTGGCAGGAGACACAGCCATggGCGTGGATAGTGACAGGGGGGCTGAGGGAGGGGGTGAGTCATTGTGTTGGGGAAGCAGTGAGGGATCATGCGGCGGCGGCCTCCTCCCTGTCCCAGAAGAAAGTCATCGCTGTGGGCGTGGCCCCCTGGGGGTTGGTGCACAACAGACAGCAGCTCATCAACGCACAGGGTAGTTTTCCAGCACGATATTATGTCCAGAACACATCCCGTGACTCGTGCTGCCTGGATAATAACTACCAGGCCTTCCTGCTGGTGGATGATGGGAGTGTAGGCCGGCGGGGAGGGGAGATGGTCTTCAGGGCCAAGATGGAGGACTACATCTCCCACCAACGCACAGGCATCTGGGGCAGTGGCAGTATAGATGTCCCTGTATTGTGTATGCTCATCTCAGGGGACGCTGCCATGCTGGAGaggGTGGATCTCTCTCTGAAGAAGGCTACTCCCTGGCTGGTGTTGAATGGTTCTGGTCCAGCGGCGGACCTTATCTGTGAGCTGCTGGATGCACTGTCAGCCGGGCCCATGAGCCCCCCCTCTCCCCAGTCAGAGGCTGAGGGGAGCAAGAGCCCCAGTGCAGAACTGCGTGACAGGGCCCGTGAGAGGGTCCGGAGGCACTTTACTGCCGAGGCAGACCTGGAGAAGCTGGTGGACAGGgcTCTGAGTATCTACCAGAACAGAGATCTGATCACAGTGTTCCACGGGGAGCAGGAGAGTTCTGATGATTTTGACACAGTGCTACTGAAGGCTCTCGTCAGagCCAGTAAACGTGTGTCCAGCGATGCCAGTGAGTACACAGAGGAGCTGAAGCTAGCAGTAGCCTGGAACAGGGTGGACATTGCTAAGAGTGAACTCTTCAACGGAGGCATCCAATGGAAGTACGAGGACCTAGAGGATTCCATGACGGACGCGCTGATCAACGACAAGCCCCAGTTCGTGCGTCTCTTCACCGAGAATGGCCTCAACATCCTGGACTACCTGACATACCGGCGTCTGGAGGGCCTGTACCGCTCGCTTTCCGACAGCTCTCTGGCCTACACGCTGCTCCAGCGCCGCCTCACAGAGAGGCAGGGCTTGGCCGGGTCTCTTCCCACCGTCCCCTGCTCTCTGGACAGGGCCTCGCTCCTCAAGAGCCCCATATCAGAACCCTCGTCGGCCAAAGAGCTCAGCTTGTATGAGATGTCAAGGCTTCTATGGGACATCCTGGGAGATGTGTGTGAGCCCTTCTACTACAGCCCTCTGAAGTTGGACCAAAGCACCAGCACCAGGAGAGCACTGAAGCACATGAAAAAGTTGTTGCTGGAGGAGTGTACATACAAGGAGCaacgctgtctctctccctgggccTCTCTGTTCATCTGGGCCGTGCTGCAGAACCGCAGTGAGATGGCCGTCTACTTCTGGGAGATGGCAGGGGAGTCTGTCCTCAGTGCTCTGGCTGGCTGTAAGATTCTGAGGGAGCTGTCTAAGCTGGAGAGTGAGACGGAGACCAAGCTCTCTATGAAGGAGCTGTCCCAGAAGTTTGAGAACTTGGCCCTTGACGTGTTCAGTGAGTGCTACCAGAGCAGTGAAAGACGCTCCTTCACCCTCCTTATAAGGAAGTCTCCTGTGTGGGGCGGAGCTACCTGTCTGCAGATGGCCACTGCAGCTGACGCCCGCCTCTTCTTCAGCCATGACGGCGTGCAGTCTCTGCTGTCTCAGATATGgtggggagacatggagaggagcaCGAAAGTCTGGAAACTGGTCCTCACTTTCTTCTTACCCCCCCTCATCTACACCAACCTCATCACTTTCAGggaacaggaggaggaggggaagtcGGAGGAGGTGACTCATGGTCGGGACACAGACAGTCTGGATGGAGGAGATGCCACCGTGTTTTCTCTCGCCGACATCATGCaaacGGAAGAGGATGCTGAGGAATATGCTGCTCTAAGGGCCAAACTGAAAGGTGCCTCCAATCCCAAGAGGCCCTTCATACTGCAGCGCTGGAGGGAGTTCTGGTTTGCGCCCGTCACCTCGTTCCTGGGCAACGTGCTGATGTACTTCCTGTTCCTTTCCCTGTTTGCTTACATCCTTTTGGTGGACTTCAAGCCTCCGCCGCCTCACGGCCCGTCCACCTTAGAGTTTGTTCTATACTTCTGGGTTTTCACCATGGTCTGTGAGGAGATTCGACAGACGTTCTTCGTGGGTAGCAACACTATATATCAGAGGATGAGTCTCTACATCCAGGACATGTGGAATAAGTGTGACATCTTGGCCATCTCACTCTTTGCCCTGGGCATGTGCTGCAGAATGTTCCCGTGGTCCTATGAGTTTGGCCGTGCTGTGTTTGCTGTGGACTACATGGTGTTTACCCTTCGTCTCATCCACATCTTCGCCATCCACAAACAACTGGGACCCAAGATCATCATCGTCGGCAACATGATGAAGGacatcttcttcttcctcttcttcctggCGGTGTGGCTCATGGCCTACGGCGTAGCCAATCAGGCGCTGCTCTACTCCTATGACCCCCGTCCCAATTGGATCTTTCGCAGAGTGTTCTACAGGCCATACCTACACATATTTGGACAGATCCCCATACACGAAATGGATGCTGATAAACTAGAGGAGAGGATACAGTGCACCAATAACGCAACCCTGATCGAGGCAGGGGCAGAGCCCTGCATGAGTACCTACGCCAACTGGCTGGTGGTCATCCTTCTGGTCATCTACCTGTTGGTCACCAACATCCTCCTGGTCAATCTGCTCATCGCCATGTTCAGTCATACGTTCTCAAAAGTTCAGGAGAACAGCGACACCTACTGGAAGTTTCAGCGCTACAAGCTTATCTTGGAGTACCATTCCAGACCCTGCCTGGCGCCACCCTTCATCATCatctcccacctccacctcttcaTCAAGAGGCGCATCCGCAGGATCCCCTCCGTCAAGATCAAACACTTTGTTCTGGAGATCCATGGTAGGCAGGCCAGTAAACTAAACATGTGGGAGGCCATCCAGAAGGAGAATATACTGTCTGCCCAGAACAAACGAGAGCGGGAGAGCGACTCGGAGAGACTCAAACGCACCTCCGTCAAGGTGGACAGTGTCCTAAAGCAGATGGTAAAGATCCAGGACCACAACCGCAGGCTGAGAATGCTAGAGACCGAGGTCAGTGTCAGCCTGGGCCGCTGCCTCTGGtcacagcatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagccttataTACCCAGTGGCAACAAGTTTCAGTGGTCCTTAAAGGTGGGgatggctttgtgtgtgtggaggagcggAGCTATTGAGTCCTTACCCCATGACGCCTGTGCCTCTAGGTCAGCCACCTCAGTCCAATCCCCGGTCACCGTCCGTTTAGGTTTAACTTTCCTTGTGgataccagaagtcctcacaaggatagtaaaacaaggaaaatttgGACAAGTGTGGATATTTTGCCTGTCCCCACGAGGAGAAATACTATTTTAggggtaaggtttagggttagaattagggttagggttaggtatagttttagatttaggggttagggaaaataacctctctctccttctcgcccccatcccctctctcttgtTCCAAGTTGGAgtactgttctagtgccctctccTGGATGGTGGACGCTCTCTCTCAGAGTAACTTGGTAAAGACCACACGTCCTCCGCCCGCTCTCAGAGATCTGACCCCTCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1245700 lncRNA upstream 48944 60576422 ~ 60576654 (+) True G1095340
TU1245695 lncRNA upstream 55753 60569605 ~ 60569845 (+) True G1095335
TU1245693 lncRNA upstream 57246 60568081 ~ 60568352 (+) True G1095333
TU1245692 lncRNA upstream 57530 60567838 ~ 60568068 (+) True G1095332
TU1245689 lncRNA upstream 59353 60566017 ~ 60566245 (+) True G1095329
TU1245781 lncRNA downstream 91504 60779263 ~ 60779496 (+) True G1095413
TU1245815 lncRNA downstream 136958 60824717 ~ 60824999 (+) True G1095438
TU1245817 lncRNA downstream 146515 60834274 ~ 60834565 (+) False G1095440
TU1245822 lncRNA downstream 146515 60834274 ~ 60834478 (+) True G1095440
TU1245839 lncRNA downstream 164685 60852444 ~ 60854828 (+) True G1095449
XM_021624377.2 mRNA upstream 29377 60576961 ~ 60596221 (+) False scaf1
XM_021624375.2 mRNA upstream 29377 60576962 ~ 60596221 (+) False scaf1
XM_036937946.1 mRNA upstream 29377 60576962 ~ 60596221 (+) True scaf1
XM_036937942.1 mRNA upstream 81569 60513247 ~ 60544029 (+) True prr12b
XM_021624373.2 mRNA upstream 114298 60501702 ~ 60511300 (+) False prrg2
XM_036937948.1 mRNA downstream 8853 60696612 ~ 60777061 (+) False LOC110539079
XM_036937961.1 mRNA downstream 110482 60798241 ~ 60805113 (+) True LOC110539110
XM_021626073.2 mRNA downstream 121220 60808979 ~ 60813429 (+) True LOC110539099
XM_036937968.1 mRNA downstream 139685 60827444 ~ 60832100 (+) False LOC110538924
XM_036937967.1 mRNA downstream 139702 60827461 ~ 60832100 (+) False LOC110538924
TU1245603 other upstream 239625 60385664 ~ 60385973 (+) True G1095244
TU1244425 other upstream 591578 60031003 ~ 60034020 (+) True G1094218
TU1244093 other upstream 1082995 59541558 ~ 59542603 (+) True G1093909
TU1241903 other upstream 2403408 58216155 ~ 58222190 (+) False LOC118937686
TU1241907 other upstream 2710766 57899471 ~ 57914832 (+) True LOC110537841
TU1245572 other downstream 8928 60696687 ~ 60714012 (+) True LOC110539079
TU1245566 other downstream 128732 60816491 ~ 60818897 (+) True G1095209
TU1245870 other downstream 266941 60954700 ~ 60965595 (+) True mmp25a
TU1245937 other downstream 349980 61037739 ~ 61352345 (+) True G1095540
TU1246640 other downstream 1758745 62446504 ~ 62447474 (+) True LOC118937701

Expression Profile