RNA id: XM_036937961.1


Basic Information

Item Value
RNA id XM_036937961.1
length 2173
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC110539110
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 60798241 ~ 60805113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTCTCTCTCTTCTGCTGCCCGTCCCACATTAGTGCCGTCTGTGTCGGGTCTGCAACGGGGTCTCTTCGAACTGTGCCATTTTTACAGCATTCTTAAACTTTAAAGGGTGGGGTAGACAAACACTACTAAGGAGGACAAGAGGGTTACTTTTTTTCCAAAGGAGAAGGACACCTACCTTTTCCAGGAGTGATTTTATTCATCATTGTTTTGTGAGTTGAGAACAAGTGTCTGGATTTCTACTTGGAAATCATTCAACTGGGCATTACACAGGCCTATTGTGTGCACTTATTTATAACTGGGGCCCGTTCTTCctagggtctgtgtgtgtgtgtgtgtgggtgggtgtttgtgtgtgtgtgggacagaaaGGCAACGAACTCTGGGGGTGTCCGTGTGCACGTGCTAAACCATTGCACTGCAAAGGGAGTGATCCCTCGTTTATCTGGTatcatccctcactctccttGTTTATCTATCGTCCCTCACTCTCAACCCTTTGCTCTGAGATTAATCATGGCCTCCTTTAAGACGTGGCTCTTGGGACTGTTCCTAGCCCTGCTCTGCACCTTCCAGACCCCTCTTGCCCCTGGCGTCAAGGCTCAAGACCTGCCACTGGCCCCCCAACAGGATGTAGTAGCTGATGACGGAGGGGAGCATGCAGCGGAGGTAGGGGGAGATGACGATGATgacgatgacgatgatgatgatgatgatgatgatggggacaGTAAAGAGgacgatgatgatgacgatgatgatgatgacgacgatgatgatgacaatgatgacgatgatgatgacgatgatgacgaCGACGACGATGATGACGACGATGAtgacgacgatgatgatgatgatgacgatgatgatgatgacaatgaTGACGACGATGACGACGATGATGACGACGACGATGatgacgacgacgacgacgacgatgatgataacgacgatgatgatgatgatgatgatgatgacgacaacgatgatgatgatgatgatgacgatgacgaCGATGacaaagatgatgatgatgatgatgatgacgacgatgacaaagatgacgatgatgatgatgatgatgatgatgacgacgacgacgacgacgacgacgatgATGACCACACAGAGGCTGACGGTAATAACgacaatgatgatgatgtgcCAGCTGCAGCTGATGATAATGACGATAATGACGACGATGATGACGatgacgacgacgacgacgatgacgatgatgatgatgaagaggaggaagatgacggTCAACTGTATCACAAAGGATCCCTCTGTTCATACTGTGAATACTGTGAGcactgtGACACCTGCGACAAGTGCCCATGTGCAGAGGGAGATAAGTCTAAGCACTGTGACACCTGCCAGATCTGCAACTTCTGCTACGTGTGTCCCGTTTGCAGCACTCTTTGCCAACCAGGTGGTTTTCTGGACGAGCTGACTGGATCGATCTATAAGACTGTAGCCGACGTCTTCGAAGCTGACAAATAAGCCCCCTGTCGCCACCATGTGGCCAAGGAAGATACTGCAACCAAGGGATTGTATTCACTGTCATTATTTTCACTTTTAATAAGTTATAAGTTATTTTTctgtcttttttgttgttgactgaGAACACCACAAACATGCACACTGGATGTAGAGATATTGGATATATTGGATACACATATTGGATATAATGGAAGTTGGAAGTTGGAAGTTGTGGAAGTTGTGATGAGAATAACTTTAATTGAGCTGTTTGTGTATAATTGTTAGATGACAGGTTCATGGTATTCTTCTCAGGAACATGCATTCATATTTTAAAGTCATATCTGTGTTtcttaaacacagtggggttgtaTGAAATAAACTAAAAGGGGACGTTTTAAACATTTGTGCTGTAATGTTTTTATGTGCACTGTCAAATTAAATGGAAAATGCAGCTAGAATTAGGTTTTAACAGAACAAAATATATTGGCAGATATGAGCAAACATGGGGTATTTTATCATTTCAGCTTCAATTGGAAGATTCATATTGTGTAATGGGGAATATAAGCATAGAGTGTAAATTGTTGACTGTCATTGGGTAGAATTTAcagtatatactgaacaaaatataaatgcaacatgttggtgccatgtttcatgagctaaaataaattatcccagaaatgtta

Function

GO: NA

KEGG:

id description
K23450 HRC; sarcoplasmic reticulum histidine-rich calcium-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1245781 lncRNA upstream 18745 60779263 ~ 60779496 (+) True G1095413
TU1245700 lncRNA upstream 221587 60576422 ~ 60576654 (+) True G1095340
TU1245695 lncRNA upstream 228396 60569605 ~ 60569845 (+) True G1095335
TU1245693 lncRNA upstream 229889 60568081 ~ 60568352 (+) True G1095333
TU1245692 lncRNA upstream 230173 60567838 ~ 60568068 (+) True G1095332
TU1245815 lncRNA downstream 19604 60824717 ~ 60824999 (+) True G1095438
TU1245817 lncRNA downstream 29161 60834274 ~ 60834565 (+) False G1095440
TU1245822 lncRNA downstream 29161 60834274 ~ 60834478 (+) True G1095440
TU1245839 lncRNA downstream 47331 60852444 ~ 60854828 (+) True G1095449
TU1245850 lncRNA downstream 101226 60906339 ~ 60907013 (+) False G1095460
XM_036937948.1 mRNA upstream 21180 60696612 ~ 60777061 (+) False LOC110539079
XM_036937947.1 mRNA upstream 110126 60625597 ~ 60688115 (+) False trpm4a
XR_005035052.1 mRNA upstream 110481 60625595 ~ 60687760 (+) False trpm4a
XR_005035053.1 mRNA upstream 110481 60625596 ~ 60687760 (+) False trpm4a
XR_005035054.1 mRNA upstream 110482 60625598 ~ 60687759 (+) True trpm4a
XM_021626073.2 mRNA downstream 3866 60808979 ~ 60813429 (+) True LOC110539099
XM_036937968.1 mRNA downstream 22331 60827444 ~ 60832100 (+) False LOC110538924
XM_036937967.1 mRNA downstream 22348 60827461 ~ 60832100 (+) False LOC110538924
XM_036937966.1 mRNA downstream 22351 60827464 ~ 60832100 (+) True LOC110538924
XR_005035059.1 mRNA downstream 37578 60842691 ~ 60844148 (+) False LOC118937692
TU1245572 other upstream 84229 60696687 ~ 60714012 (+) True LOC110539079
TU1245603 other upstream 412268 60385664 ~ 60385973 (+) True G1095244
TU1244425 other upstream 764221 60031003 ~ 60034020 (+) True G1094218
TU1244093 other upstream 1255638 59541558 ~ 59542603 (+) True G1093909
TU1241903 other upstream 2576051 58216155 ~ 58222190 (+) False LOC118937686
TU1245566 other downstream 11378 60816491 ~ 60818897 (+) True G1095209
TU1245870 other downstream 149587 60954700 ~ 60965595 (+) True mmp25a
TU1245937 other downstream 232626 61037739 ~ 61352345 (+) True G1095540
TU1246640 other downstream 1641391 62446504 ~ 62447474 (+) True LOC118937701
TU1247110 other downstream 2497378 63302491 ~ 63334694 (+) True LOC100305204

Expression Profile