RNA id: XM_036937966.1


Basic Information

Item Value
RNA id XM_036937966.1
length 1876
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC110538924
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 60827444 ~ 60832100 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctaactctctccatctctactctGGCTCgcctccctgctctctctttctctttgcacACACAGTCAACAAAAGCGAGgtcagaggagagggatgagggtataacgaaagagaggaagaggaggaagagcgaAACCTTGGAAGCAGTGGAAAGACTAGAGAAACATCAAGTTTGGAAAACCATTGGCATCCTCTCTCTTGAGGAGTAGTTCTGATCTGTGTTCTTATTGGAGGAGAGAAGTAAGAGGTCAGAGGTGAAGGGGAAGTGTTATGTGTGAGAAACTCAGCATGCTGAATCTACAGAACACCTCCAGCTGGACTGGGCCAAACAACTGGTACCATCAACCAACACAGCACGATGGCTGTGTGGTGGATGATGTGAGCGTGCGGatggtgggaggaggagaaggagtgcaaagagagagggatgaggtagaGGACGCCCAGCATCACCTCCAGCTGAAGAGAAAGCTCCAGAGGAATCGCACCAGTTTCACCCAGGAGCAAATTGATGCGCTGGAGAAAGAGTTTGAACGGACACATTACCCAGATGTCTTTGCCAGAGAGAGATTGGCAGCTAAAATCGACCTTCCAGAGGCTCGCATTCAGgtgtGGTTTTCCAATCGGCGAGCtaaatggaggagggaggagaagttACGCAATCAGAAGCGGTCAGGGGGCGGGACTTCCTGTTCTCAGGCACATGCCCCCCTCAGCACCTCCTTCAACACAGGTGTCTATCACTCTCACCATGGTAACAGCTCAGCCTCGATGCACAGTCGCAGTGACAACTCTCTCTCAAGCTACGGCTCTCTCTCAGTCTTCTCCAATATGCAGtcgtTGCCCCCCCAGTCCACTCCCTCTTACCCCTgcatgctccctccctccccctctcctccccccctgccCCGGAAGTTTGACTCCCTCTCTTACCCCTCTCCTCACCTACCTCCCCCTCACTCTGCCAGCTCCAACACAGgATATCTCTCTCCTGGTGTGTCGGGTAGTGAGCAGGACTTAGGTCAGTACTGGACCAGACTCCAGTGAGAATAACACAGTTACGGCATGACACTAGACCACCACCAGACCTGCCAGTATCTGAAGATCCACCTATTCTCTGTGACAGACTAAGATACCCAAACACCCAATCCGTTACAATCCAAAGCGATTACAATCAGTCGTTCTAATAATGACAAAACGACCAAAAAAAGTATCAATGACCTACCACAGCCAATAACAATCATGGATGGCCTTGGAACCACCAATGACAATCTAGTATGGGCCTGAAGCAGCCACTGACAATCAAGTATTGCTACTGGACTATTAATTACAATTAAGCTTGATCTCAGCGCACCAGGCAATCAAATGATGAACTGAAACTGGATCCCAGCAGATTCACTCactccttcactcactcactcattccttTTGATGTTTGTTCAGATCAAACAAGACAATCAAGCGTTGAAATGAAATCACCAATCATAGTCAAGCATGGATTTCATTTAACCAATGACAGTCGAGCAGGGATTAATGCAACCAATGACCTAGGAGAGTATAAGACAATCAAAAACAAATACTAGTGAATAAGGACGTTACTGTGATGCCATATTTTtgtcctctctccattcctttcTGTCAATCTGACTTTTGCAATCTTACCCCTTTTAAAATCCCTTCCCTCATCTGTACATttagcactgtgtgtgtgcgtgcgtgcgtgcgtgcgtgtgtgtacgtgcagacatgagtgagtgtttgtatgtgtgtagctgcattttgtgtatgtgtgtgtctttaaaCTGCTAATCATTTTAGTGTACTCCCTTTTTGTGAAACTGTTTGAACTAAGAATAAAATTCTAAATGTGAAACTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1245815 lncRNA upstream 2465 60824717 ~ 60824999 (+) True G1095438
TU1245781 lncRNA upstream 47968 60779263 ~ 60779496 (+) True G1095413
TU1245700 lncRNA upstream 250810 60576422 ~ 60576654 (+) True G1095340
TU1245695 lncRNA upstream 257619 60569605 ~ 60569845 (+) True G1095335
TU1245693 lncRNA upstream 259112 60568081 ~ 60568352 (+) True G1095333
TU1245817 lncRNA downstream 2174 60834274 ~ 60834565 (+) False G1095440
TU1245822 lncRNA downstream 2174 60834274 ~ 60834478 (+) True G1095440
TU1245839 lncRNA downstream 20344 60852444 ~ 60854828 (+) True G1095449
TU1245850 lncRNA downstream 74239 60906339 ~ 60907013 (+) False G1095460
TU1245851 lncRNA downstream 74508 60906608 ~ 60911659 (+) True G1095460
XM_021626073.2 mRNA upstream 14035 60808979 ~ 60813429 (+) True LOC110539099
XM_036937961.1 mRNA upstream 22351 60798241 ~ 60805113 (+) True LOC110539110
XM_036937948.1 mRNA upstream 50403 60696612 ~ 60777061 (+) False LOC110539079
XM_036937947.1 mRNA upstream 139349 60625597 ~ 60688115 (+) False trpm4a
XR_005035059.1 mRNA downstream 10591 60842691 ~ 60844148 (+) False LOC118937692
XR_005035060.1 mRNA downstream 10591 60842691 ~ 60844148 (+) True LOC118937692
XM_036937959.1 mRNA downstream 53971 60886071 ~ 60893424 (+) True bcl2l12
XM_021626048.2 mRNA downstream 99023 60931123 ~ 60965921 (+) False mmp25a
XM_021626074.2 mRNA downstream 205624 61037724 ~ 61041909 (+) True LOC110539100
TU1245566 other upstream 8567 60816491 ~ 60818897 (+) True G1095209
TU1245572 other upstream 113452 60696687 ~ 60714012 (+) True LOC110539079
TU1245603 other upstream 441491 60385664 ~ 60385973 (+) True G1095244
TU1244425 other upstream 793444 60031003 ~ 60034020 (+) True G1094218
TU1244093 other upstream 1284861 59541558 ~ 59542603 (+) True G1093909
TU1245870 other downstream 122600 60954700 ~ 60965595 (+) True mmp25a
TU1245937 other downstream 205639 61037739 ~ 61352345 (+) True G1095540
TU1246640 other downstream 1614404 62446504 ~ 62447474 (+) True LOC118937701
TU1247110 other downstream 2470391 63302491 ~ 63334694 (+) True LOC100305204
TU1247501 other downstream 3055996 63888096 ~ 63890557 (+) False LOC110538933

Expression Profile