RNA id: NM_001124551.2


Basic Information

Item Value
RNA id NM_001124551.2
length 465
RNA type mRNA
GC content 0.53
exon number 3
gene id hba1
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 73585417 ~ 73586189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGAGTCTGACAGCAAAGGACAAATCTGTGGTCAAGGCCTTCTGGGGCAAGATTAGTGGAAAGGCAGATGTCGTCGGTGCTGAGGCTTTGGGGAGGATGCTGACTGCTTACCCCCAGACTAAGACCTACTTCTCCCACTGGGCAGACCTGAGCCCCGGCTCTGGGCCAGTCAAGAAGCATGGAGGCATCATCATGGGTGCAATTGGTAAAGCAGTCGGACTGATGGACGACCTCGTGGGGGGAATGAGTGCTCTCAGCGATCTGCACGCCTTCAACCTGCGCGTTGACCCTGGAAACTTCAAGATCCTGTCCCACAACATCCTTGTGACCCTGGCTATTCACTTCCCTTCTGATTTCACTCCCGAAGTGCACATTGCTGTGGATAAATTCCTTGCAGCCGTGTCCGCTGCCCTGGCTGACAAATACAGATAAGACCATCATGAAAGTCCATCATTTGATTCCAG

Function

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0005833 hemoglobin complex cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K13826 HBZ; hemoglobin subunit zeta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1261556 lncRNA upstream 24105 73560328 ~ 73561312 (+) True G1109608
TU1261585 lncRNA upstream 29444 73555743 ~ 73555973 (+) True G1109637
TU1261584 lncRNA upstream 30375 73554773 ~ 73555042 (+) True G1109636
TU1261518 lncRNA upstream 80247 73504614 ~ 73505170 (+) True G1109591
TU1261494 lncRNA upstream 113629 73470700 ~ 73471788 (+) True G1109572
TU1261549 lncRNA downstream 12622 73598811 ~ 73684593 (+) False G1109605
TU1261548 lncRNA downstream 12639 73598828 ~ 73617769 (+) False G1109605
TU1261550 lncRNA downstream 12639 73598828 ~ 73662902 (+) False G1109605
TU1261551 lncRNA downstream 12639 73598828 ~ 73618305 (+) False G1109605
TU1261552 lncRNA downstream 12639 73598828 ~ 73684593 (+) True G1109605
XM_021625282.2 mRNA upstream 15614 73568810 ~ 73569803 (+) True LOC110538450
XM_021625283.2 mRNA upstream 22013 73562501 ~ 73563404 (+) True LOC110538451
XR_002475761.2 mRNA upstream 25873 73553308 ~ 73559544 (+) True LOC110538454
XM_021625272.2 mRNA upstream 45529 73533277 ~ 73539888 (+) True mpg
XM_021625288.2 mRNA upstream 122526 73459899 ~ 73462891 (+) True LOC110538456
XM_021625280.2 mRNA downstream 10396 73596585 ~ 73597588 (+) True LOC110538448
NM_001160564.2 mRNA downstream 14871 73601060 ~ 73601971 (+) True hba4
XM_036938343.1 mRNA downstream 22465 73608654 ~ 73613476 (+) True LOC110538449
XM_021625279.2 mRNA downstream 33055 73619244 ~ 73620456 (+) True LOC110538447
XM_036938342.1 mRNA downstream 42464 73628653 ~ 73629928 (+) False LOC110538437
TU1261395 other upstream 199550 73384808 ~ 73385867 (+) True LOC110538462
TU1261422 other upstream 279263 73305425 ~ 73306154 (+) True G1109505
TU1257805 other upstream 1567127 72017593 ~ 72018290 (+) True LOC110538241
TU1257763 other upstream 1642618 71941551 ~ 71942799 (+) True psmg3
TU1257168 other upstream 2678988 70902905 ~ 70906429 (+) True G1105655
TU1261764 other downstream 247454 73833643 ~ 73834606 (+) True G1109778
TU1261780 other downstream 260066 73846255 ~ 73846794 (+) True G1109786
TU1263295 other downstream 1374077 74960266 ~ 75048356 (+) True G1111126
TU1264041 other downstream 1832600 75418789 ~ 75423163 (+) True G1111805
TU1264215 other downstream 2158950 75745139 ~ 75745620 (+) True G1111961

Expression Profile