RNA id: TU1241944


Basic Information

Item Value
RNA id TU1241944
length 265
lncRNA type intronic
GC content 0.59
exon number 1
gene id G1091938
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 57950185 ~ 57950449 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgacgaggtagtcaggaggagacaaggaacagctgggggaaagcgggggagaaaaggtaacctaacaacgaccagcagagggagacagggtgaagggaaaggacagagacaagacacaacatgacagtacatgacagtacccccccactcaccgagcgcctcctggcgcactcgaggaggaaacctggcggcaacggaggaaatcctcgatcagcgcacggtccagcacgtcccgagagggaacccaactcctctcctcaggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1241765 lncRNA upstream 281229 57668705 ~ 57668956 (+) True G1091783
TU1241763 lncRNA upstream 286999 57661859 ~ 57663186 (+) True LOC110537840
TU1241752 lncRNA upstream 299121 57650520 ~ 57651064 (+) True G1091771
TU1241750 lncRNA upstream 301295 57648559 ~ 57648890 (+) True G1091769
TU1241743 lncRNA upstream 310140 57639721 ~ 57640045 (+) False G1091764
TU1241971 lncRNA downstream 43837 57994286 ~ 58063360 (+) True G1091964
TU1242066 lncRNA downstream 210793 58161242 ~ 58202692 (+) True G1092052
TU1242085 lncRNA downstream 254261 58204710 ~ 58204964 (+) True G1092071
TU1242086 lncRNA downstream 254659 58205108 ~ 58205773 (+) True G1092072
TU1242088 lncRNA downstream 257700 58208149 ~ 58208834 (+) True G1092074
XR_005035039.1 mRNA upstream 35213 57893341 ~ 57914972 (+) False LOC110537841
XR_005035036.1 mRNA upstream 35213 57893344 ~ 57914972 (+) False LOC110537841
XR_005035035.1 mRNA upstream 35213 57899431 ~ 57914972 (+) False LOC110537841
XR_005035040.1 mRNA upstream 35213 57899431 ~ 57914972 (+) False LOC110537841
XR_005035038.1 mRNA upstream 35213 57899448 ~ 57914972 (+) False LOC110537841
XM_036937872.1 mRNA downstream 16863 57967312 ~ 58071571 (+) False LOC110537841
XM_036937874.1 mRNA downstream 16864 57967313 ~ 58071571 (+) False LOC110537841
XM_036937875.1 mRNA downstream 16865 57967314 ~ 58071571 (+) False LOC110537841
XM_036937876.1 mRNA downstream 16865 57967314 ~ 58071571 (+) False LOC110537841
XM_036937877.1 mRNA downstream 59399 58009848 ~ 58071571 (+) False LOC110537841
TU1241907 other upstream 35353 57899471 ~ 57914832 (+) True LOC110537841
TU1241421 other upstream 832258 57115825 ~ 57117927 (+) True LOC110537831
TU1241171 other upstream 1197238 56752418 ~ 56752947 (+) True G1091235
TU1241153 other upstream 1224182 56725607 ~ 56726003 (+) True G1091217
TU1237658 other upstream 3669464 54274306 ~ 54280721 (+) True LOC110538908
TU1241903 other downstream 265706 58216155 ~ 58222190 (+) False LOC118937686
TU1244093 other downstream 1591109 59541558 ~ 59542603 (+) True G1093909
TU1244425 other downstream 2080554 60031003 ~ 60034020 (+) True G1094218
TU1245603 other downstream 2435215 60385664 ~ 60385973 (+) True G1095244
TU1245572 other downstream 2746238 60696687 ~ 60714012 (+) True LOC110539079

Expression Profile