RNA id: TU1243889


Basic Information

Item Value
RNA id TU1243889
length 280
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1093715
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 58982635 ~ 58982914 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtggccgtaatgcacccttAAAAACATCCAGGCCTTTTGCGTCCAGTGGCCGTTGTGCTGCCTGCTCAGTGCCTCTCACTCACCTGGCTcacgggtctttctcacaggctacaagtaaAGACAGACACATCGCGGACACAACTGCAtgtgtccttatccaattccgaggtgcatattgaagatattggaagaactgtccatattaacatttttttttttcaacaagataagtaggcctaacgaacagcaaagcactagcctatgtcgaTCTACtctcccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1243888 lncRNA upstream 163 58982273 ~ 58982472 (+) True G1093714
TU1243887 lncRNA upstream 1115 58981256 ~ 58981520 (+) True G1093713
TU1243852 lncRNA upstream 89472 58892952 ~ 58893163 (+) True G1093680
TU1243850 lncRNA upstream 91739 58890622 ~ 58890896 (+) True G1093678
TU1243722 lncRNA upstream 155185 58822927 ~ 58827450 (+) False LOC110538919
TU1243894 lncRNA downstream 3533 58986447 ~ 58987204 (+) True G1093719
TU1243987 lncRNA downstream 135808 59118722 ~ 59118929 (+) True G1093810
TU1243997 lncRNA downstream 149272 59132186 ~ 59132476 (+) True G1093820
TU1244000 lncRNA downstream 160364 59143278 ~ 59143511 (+) True G1093823
TU1244054 lncRNA downstream 228876 59211790 ~ 59212987 (+) True G1093874
XM_021624305.2 mRNA upstream 7499 58961767 ~ 58975136 (+) True LOC110537870
XM_021624301.2 mRNA upstream 23401 58935530 ~ 58959234 (+) False LOC110537868
XM_021624302.2 mRNA upstream 25507 58935535 ~ 58957128 (+) True LOC110537868
XM_021624299.2 mRNA upstream 65226 58875401 ~ 58917409 (+) True LOC110537867
XM_021624300.2 mRNA upstream 65227 58875401 ~ 58917408 (+) False LOC110537867
XM_036939515.1 mRNA downstream 69415 59052329 ~ 59106006 (+) True LOC110537871
XM_036937902.1 mRNA downstream 250440 59233354 ~ 59343106 (+) False sez6l2
XM_036937900.1 mRNA downstream 250895 59233809 ~ 59343106 (+) False sez6l2
XM_036937904.1 mRNA downstream 250896 59233810 ~ 59343106 (+) False sez6l2
XM_036937903.1 mRNA downstream 297576 59280490 ~ 59343106 (+) False sez6l2
TU1241903 other upstream 760445 58216155 ~ 58222190 (+) False LOC118937686
TU1241907 other upstream 1067803 57899471 ~ 57914832 (+) True LOC110537841
TU1241421 other upstream 1864708 57115825 ~ 57117927 (+) True LOC110537831
TU1241171 other upstream 2229688 56752418 ~ 56752947 (+) True G1091235
TU1241153 other upstream 2256632 56725607 ~ 56726003 (+) True G1091217
TU1244093 other downstream 558644 59541558 ~ 59542603 (+) True G1093909
TU1244425 other downstream 1048089 60031003 ~ 60034020 (+) True G1094218
TU1245603 other downstream 1402750 60385664 ~ 60385973 (+) True G1095244
TU1245572 other downstream 1713773 60696687 ~ 60714012 (+) True LOC110539079
TU1245566 other downstream 1833577 60816491 ~ 60818897 (+) True G1095209

Expression Profile