RNA id: TU1246146


Basic Information

Item Value
RNA id TU1246146
length 231
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G1095721
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 61472553 ~ 61472783 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAATATTTGATTCAATATTTCCACACTAGTTACCCCACATTTGCTAAACATTCGTATACTGTAACTTCCGACACTGCACATGTTTGCATTACTAGCAGATGTAAACATGTTAGACTAAATTGGGAACCGATCTCTTATCTGATTAACTGTATGTTAATAGAGCTAAAGGTCTAATGTTAACTTACACAGCGACTCAACTTTTGTAAAGGTTGTTCAGGAAATCTAAACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1246145 lncRNA upstream 256 61471887 ~ 61472297 (+) True G1095720
TU1246080 lncRNA upstream 26189 61404983 ~ 61446364 (+) True G1095666
TU1246077 lncRNA upstream 27612 61403621 ~ 61444941 (+) True G1095665
TU1246068 lncRNA upstream 82211 61390061 ~ 61390342 (+) True G1095657
TU1246064 lncRNA upstream 92114 61380225 ~ 61380439 (+) True G1095653
TU1246097 lncRNA downstream 635 61473418 ~ 61473816 (+) True G1095676
TU1246158 lncRNA downstream 27543 61500326 ~ 61500543 (+) True G1095733
TU1246161 lncRNA downstream 30571 61503354 ~ 61503663 (+) True G1095736
TU1246162 lncRNA downstream 31072 61503855 ~ 61504430 (+) True G1095737
TU1246181 lncRNA downstream 56775 61529558 ~ 61530059 (+) True G1095753
XM_021626078.2 mRNA upstream 147398 61317055 ~ 61325155 (+) True LOC110539102
LOC110538925 mRNA upstream 187360 61258812 ~ 61285193 (+) False LOC110538925
XM_036937964.1 mRNA upstream 262072 61200915 ~ 61210481 (+) True LOC118936506
XR_005035056.1 mRNA upstream 290777 61178894 ~ 61181776 (+) False LOC118936507
XM_036939520.1 mRNA downstream 51915 61524698 ~ 61530938 (+) True LOC110539107
XM_036937952.1 mRNA downstream 114780 61587563 ~ 61593452 (+) False LOC110539080
XM_036937953.1 mRNA downstream 114781 61587564 ~ 61596487 (+) False LOC110539080
XM_036937949.1 mRNA downstream 114783 61587566 ~ 61593452 (+) False LOC110539080
XM_036937951.1 mRNA downstream 114783 61587566 ~ 61593452 (+) True LOC110539080
TU1245937 other upstream 120208 61037739 ~ 61352345 (+) True G1095540
TU1245870 other upstream 506958 60954700 ~ 60965595 (+) True mmp25a
TU1245566 other upstream 653656 60816491 ~ 60818897 (+) True G1095209
TU1245572 other upstream 758541 60696687 ~ 60714012 (+) True LOC110539079
TU1245603 other upstream 1086580 60385664 ~ 60385973 (+) True G1095244
TU1246640 other downstream 973721 62446504 ~ 62447474 (+) True LOC118937701
TU1247110 other downstream 1829708 63302491 ~ 63334694 (+) True LOC100305204
TU1247501 other downstream 2415313 63888096 ~ 63890557 (+) False LOC110538933
TU1247690 other downstream 2663575 64136358 ~ 64136704 (+) True G1097063
TU1247743 other downstream 2755218 64228001 ~ 64228684 (+) True G1097116

Expression Profile