RNA id: TU1263111



Basic Information


Item Value
RNA id TU1263111
length 243
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G1110963
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 74677882 ~ 74678124 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggacctttcaGACTGCAGTGGGTTAAATCAGAGTCACACAGAGGGATTCTTGGTGGTCTTAAAAAAATCTACTTtgaaaacaaaagtatacacatcacacacatggttatgggcttaaaaaagaaTACACCTGTActatgtcagatatagagttgaaatgtattacattttcagtttgcatcccaatattacactttatatacatcacagaagactgaaatataacaaaactgttataaacat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1263109 lncRNA upstream 1293 74676347 ~ 74676589 (+) True G1110961
TU1263107 lncRNA upstream 3634 74673964 ~ 74674248 (+) True G1110959
TU1263100 lncRNA upstream 13519 74663938 ~ 74664363 (+) True G1110952
TU1262256 lncRNA upstream 17537 74660031 ~ 74660345 (+) True G1110216
TU1262255 lncRNA upstream 18492 74659056 ~ 74659390 (+) True G1110215
TU1263112 lncRNA downstream 407 74678531 ~ 74678748 (+) True G1110964
TU1263114 lncRNA downstream 2538 74680662 ~ 74680877 (+) True G1110966
TU1263133 lncRNA downstream 14539 74692663 ~ 74698625 (+) True G1110984
TU1263156 lncRNA downstream 40865 74718989 ~ 74719272 (+) True G1110998
TU1263159 lncRNA downstream 45478 74723602 ~ 74723902 (+) True G1111001
XM_021625213.2 mRNA upstream 38393 74637224 ~ 74639489 (+) True LOC110538406
XM_021625208.2 mRNA upstream 45205 74623355 ~ 74632677 (+) False LOC110538405
XM_021625205.2 mRNA downstream 52410 74730534 ~ 74761760 (+) True LOC110538402
XM_021625193.2 mRNA downstream 91881 74770005 ~ 74776525 (+) False LOC110538400
XM_021625196.2 mRNA downstream 91881 74770005 ~ 74776525 (+) False LOC110538400
XM_021625197.2 mRNA downstream 91881 74770005 ~ 74776525 (+) False LOC110538400
XM_021625199.2 mRNA downstream 91881 74770005 ~ 74776525 (+) False LOC110538400
TU1261780 other upstream 831088 73846255 ~ 73846794 (+) True G1109786
TU1261764 other upstream 843276 73833643 ~ 73834606 (+) True G1109778
TU1261395 other upstream 1292015 73384808 ~ 73385867 (+) True LOC110538462
TU1261422 other upstream 1371728 73305425 ~ 73306154 (+) True G1109505
TU1257805 other upstream 2659592 72017593 ~ 72018290 (+) True LOC110538241
TU1263295 other downstream 282142 74960266 ~ 75048356 (+) True G1111126
TU1264041 other downstream 740665 75418789 ~ 75423163 (+) True G1111805
TU1264215 other downstream 1067015 75745139 ~ 75745620 (+) True G1111961
TU1264225 other downstream 1072746 75750870 ~ 75753593 (+) True G1111970
TU1264251 other downstream 1106226 75784350 ~ 75786987 (+) False LOC110538360

Expression Profile