RNA id: TU1263112



Basic Information


Item Value
RNA id TU1263112
length 218
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1110964
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 74678531 ~ 74678748 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGTTAAAGACCTgaagaataaaccctcctcctcacagttgcccatgtcccttaatgttgatgatgatgttgttactgacaagaagcacatggctgagctctttaatcaccacttcattaagtcaggattcctatttgactcagccatgccttcTTTGcatgtccaacatttcctcatctctcaccccttctaatgcaactATCTCCGATGCTTTTCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1263111 lncRNA upstream 407 74677882 ~ 74678124 (+) True G1110963
TU1263109 lncRNA upstream 1942 74676347 ~ 74676589 (+) True G1110961
TU1263107 lncRNA upstream 4283 74673964 ~ 74674248 (+) True G1110959
TU1263100 lncRNA upstream 14168 74663938 ~ 74664363 (+) True G1110952
TU1262256 lncRNA upstream 18186 74660031 ~ 74660345 (+) True G1110216
TU1263114 lncRNA downstream 1914 74680662 ~ 74680877 (+) True G1110966
TU1263133 lncRNA downstream 13915 74692663 ~ 74698625 (+) True G1110984
TU1263156 lncRNA downstream 40241 74718989 ~ 74719272 (+) True G1110998
TU1263159 lncRNA downstream 44854 74723602 ~ 74723902 (+) True G1111001
TU1263160 lncRNA downstream 46550 74725298 ~ 74725701 (+) True G1111002
XM_021625213.2 mRNA upstream 39042 74637224 ~ 74639489 (+) True LOC110538406
XM_021625208.2 mRNA upstream 45854 74623355 ~ 74632677 (+) False LOC110538405
XM_021625205.2 mRNA downstream 51786 74730534 ~ 74761760 (+) True LOC110538402
XM_021625193.2 mRNA downstream 91257 74770005 ~ 74776525 (+) False LOC110538400
XM_021625196.2 mRNA downstream 91257 74770005 ~ 74776525 (+) False LOC110538400
XM_021625197.2 mRNA downstream 91257 74770005 ~ 74776525 (+) False LOC110538400
XM_021625199.2 mRNA downstream 91257 74770005 ~ 74776525 (+) False LOC110538400
TU1261780 other upstream 831737 73846255 ~ 73846794 (+) True G1109786
TU1261764 other upstream 843925 73833643 ~ 73834606 (+) True G1109778
TU1261395 other upstream 1292664 73384808 ~ 73385867 (+) True LOC110538462
TU1261422 other upstream 1372377 73305425 ~ 73306154 (+) True G1109505
TU1257805 other upstream 2660241 72017593 ~ 72018290 (+) True LOC110538241
TU1263295 other downstream 281518 74960266 ~ 75048356 (+) True G1111126
TU1264041 other downstream 740041 75418789 ~ 75423163 (+) True G1111805
TU1264215 other downstream 1066391 75745139 ~ 75745620 (+) True G1111961
TU1264225 other downstream 1072122 75750870 ~ 75753593 (+) True G1111970
TU1264251 other downstream 1105602 75784350 ~ 75786987 (+) False LOC110538360

Expression Profile