RNA id: TU1263140


Basic Information

Item Value
RNA id TU1263140
length 697
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G1110987
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 74784815 ~ 74786587 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACCTGGGATGGGGGACCAAAGACTCAAAATCCCAACTCACCTTTCATTTCTCCTTTGACATTCACTATGACCCCCGCATTGTCTTCAAAGTAGAGAAACACGCCATCCTTTCGCCGATACGACTTCCGCTGCCGTATCACAACCGCAGGATGCACTGTAGGAAAGAGGAAGACTATCAGAATCCAGCAACCTGACATAACTCACACTGTTGATTTTCACCATTCAGTTAAACAATTGGTCTGGAACTACTACTGTACTGAAAACTACAAGTCATTTTAAAGACCAATCAAATTACTATGCCAACCACCATTAGCAAACCACCATAATCTCTTGATTAGCTAGTCCCAGTTCATCCTATTCTAGTAATTGAATACAGAATGCAGAACACTCACCCTTTTTTCTGAGTTCTGGTTTGCCTTTCTTGACAGTGGCCATGACCATGTCACCCACACCAGCAGCGGGCAGACGGTTCAAACGTCCCTTGATGCCCTTGACAGAGATGATGTACAGGTTCTTAGCACCTGTTGTCAGCGCAGTTTATGACGGCGCCCACTGGGAGACCCAGCGAGATGCGAAACTTCGCCCCAGATGACCCACCACGTCCTTAAGAGAAGAGATTCCATTGAAGTAAACTTTGCATGGTGCAGAGACTGAAAGCACACTGCTTAAATCAAGCAAATATTATCCAAGTTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1263151 lncRNA upstream 18819 74765517 ~ 74766894 (+) True G1110993
TU1263160 lncRNA upstream 60012 74725298 ~ 74725701 (+) True G1111002
TU1263159 lncRNA upstream 61811 74723602 ~ 74723902 (+) True G1111001
TU1263156 lncRNA upstream 66441 74718989 ~ 74719272 (+) True G1110998
TU1263133 lncRNA upstream 87088 74692663 ~ 74698625 (+) True G1110984
TU1263147 lncRNA downstream 45552 74832139 ~ 74836922 (+) True G1110989
TU1263197 lncRNA downstream 52116 74838703 ~ 74840368 (+) True G1111035
TU1263198 lncRNA downstream 54705 74841292 ~ 74841617 (+) True G1111036
TU1263199 lncRNA downstream 55211 74841798 ~ 74842395 (+) True G1111037
TU1263200 lncRNA downstream 56625 74843212 ~ 74844083 (+) True G1111038
XM_021625191.2 mRNA upstream 1128 74776771 ~ 74784585 (+) True LOC110538398
XM_021625201.2 mRNA upstream 9188 74770064 ~ 74776525 (+) False LOC110538400
XM_021625189.2 mRNA downstream 5826 74792413 ~ 74831994 (+) False LOC110538397
XM_021625188.2 mRNA downstream 5832 74792419 ~ 74831993 (+) False LOC110538397
XM_021625190.2 mRNA downstream 5841 74792428 ~ 74831993 (+) False LOC110538397
XM_036938414.1 mRNA downstream 24870 74811457 ~ 74831993 (+) True LOC110538397
XM_021625185.2 mRNA downstream 144275 74930862 ~ 74933801 (+) True LOC110538393
TU1261780 other upstream 938919 73846255 ~ 73846794 (+) True G1109786
TU1261764 other upstream 951107 73833643 ~ 73834606 (+) True G1109778
TU1261395 other upstream 1399846 73384808 ~ 73385867 (+) True LOC110538462
TU1261422 other upstream 1479559 73305425 ~ 73306154 (+) True G1109505
TU1257805 other upstream 2767423 72017593 ~ 72018290 (+) True LOC110538241
TU1263295 other downstream 173679 74960266 ~ 75048356 (+) True G1111126
TU1264041 other downstream 632202 75418789 ~ 75423163 (+) True G1111805
TU1264215 other downstream 958552 75745139 ~ 75745620 (+) True G1111961
TU1264225 other downstream 964283 75750870 ~ 75753593 (+) True G1111970
TU1264251 other downstream 997763 75784350 ~ 75786987 (+) False LOC110538360

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU28786 True 498 lncRNA 0.37 3 CI01000004 1426692 ~ 1427877 (-)
tiger barb (Puntius tetrazona) TU28786 False 1519 TUCP 0.39 2 NC_056701.1 12511926 ~ 12513721 (+)