RNA id: TU1263209



Basic Information


Item Value
RNA id TU1263209
length 291
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G1111047
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 74855258 ~ 74855548 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ttatttaactagataAAAGCAGCAAAGTGCTTGTATAGTGGTTGTATACTTCTATAGAACATTTGAAATGTTTGTTCCTTTGTTGGGCCTTTGTTGTCTTGAATGCAACACTGCCATACACACATCACATTATATTTAGATACTGGCCATGAGGTGTGTGGTGCAGGCCTTTGCCTTTCTTTATACCCTCATCATGGAAGAGGGGTTCTACATGTGTTTGGGTTACCTGTCGACAGGAGAAGAGAAACCACTGGCGTTTCCTGACTGGGGCATGATAGTGTTGGATACAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1263208 lncRNA upstream 1102 74853856 ~ 74854156 (+) True G1111046
TU1263206 lncRNA upstream 4116 74850491 ~ 74851142 (+) True G1111044
TU1263205 lncRNA upstream 5455 74849544 ~ 74849803 (+) True G1111043
TU1263203 lncRNA upstream 6967 74848062 ~ 74848291 (+) True G1111041
TU1263200 lncRNA upstream 11175 74843212 ~ 74844083 (+) True G1111038
TU1263210 lncRNA downstream 529 74856077 ~ 74856455 (+) True G1111048
TU1263211 lncRNA downstream 1910 74857458 ~ 74857807 (+) True G1111049
TU1263212 lncRNA downstream 2430 74857978 ~ 74858222 (+) True G1111050
TU1263219 lncRNA downstream 3641 74859189 ~ 74859511 (+) True G1111053
TU1263224 lncRNA downstream 10873 74866421 ~ 74866992 (+) True G1111057
XM_021625189.2 mRNA upstream 23264 74792413 ~ 74831994 (+) False LOC110538397
XM_021625188.2 mRNA upstream 23265 74792419 ~ 74831993 (+) False LOC110538397
XM_021625190.2 mRNA upstream 23265 74792428 ~ 74831993 (+) False LOC110538397
XM_036938414.1 mRNA upstream 23265 74811457 ~ 74831993 (+) True LOC110538397
XM_021625191.2 mRNA upstream 70673 74776771 ~ 74784585 (+) True LOC110538398
XM_021625185.2 mRNA downstream 75314 74930862 ~ 74933801 (+) True LOC110538393
XM_021625183.2 mRNA downstream 85771 74941319 ~ 74942346 (+) True LOC110538391
XM_036938417.1 mRNA downstream 104489 74960037 ~ 75102995 (+) False LOC110538388
XM_036938418.1 mRNA downstream 104489 74960037 ~ 75102995 (+) False LOC110538388
XM_036938419.1 mRNA downstream 104489 74960037 ~ 75102995 (+) False LOC110538388
TU1261780 other upstream 1008464 73846255 ~ 73846794 (+) True G1109786
TU1261764 other upstream 1020652 73833643 ~ 73834606 (+) True G1109778
TU1261395 other upstream 1469391 73384808 ~ 73385867 (+) True LOC110538462
TU1261422 other upstream 1549104 73305425 ~ 73306154 (+) True G1109505
TU1257805 other upstream 2836968 72017593 ~ 72018290 (+) True LOC110538241
TU1263295 other downstream 104718 74960266 ~ 75048356 (+) True G1111126
TU1264041 other downstream 563241 75418789 ~ 75423163 (+) True G1111805
TU1264215 other downstream 889591 75745139 ~ 75745620 (+) True G1111961
TU1264225 other downstream 895322 75750870 ~ 75753593 (+) True G1111970
TU1264251 other downstream 928802 75784350 ~ 75786987 (+) False LOC110538360

Expression Profile