RNA id: TU1263210



Basic Information


Item Value
RNA id TU1263210
length 379
lncRNA type antisense_over
GC content 0.53
exon number 1
gene id G1111048
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 74856077 ~ 74856455 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTTGAGCTCTACATCCATAGAAATATAAACCTCAAGACCATCATACAGGCTACCTACCGAGGGGAAGCGGAGAGCCGGGATTGGTGGAGCGTCAGGGGGAGGAGCCTTGATGGCCAGGGTCTCGACATGAGGGATCTCCAGGGGCAACGGAACAGGAGTGATGGAGGAAGGGGCGGAGTTAATAGGAGGCTGGAGAGGGGAATCCCCGGGATCCTGGAAGCCAGAAGAGCTCAGGTAGCCGTCCATCTCGCAGTCGGCTGCCATGGAGACATCATGGTTAAAGGAAGGGAAGTgggagggaagagacagacaggcgtTAACATGTTATCAATCTCTTCTTTATGTCATGTACCCCTGACTGTGTTCAACATATACTGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1263209 lncRNA upstream 529 74855258 ~ 74855548 (+) True G1111047
TU1263208 lncRNA upstream 1921 74853856 ~ 74854156 (+) True G1111046
TU1263206 lncRNA upstream 4935 74850491 ~ 74851142 (+) True G1111044
TU1263205 lncRNA upstream 6274 74849544 ~ 74849803 (+) True G1111043
TU1263203 lncRNA upstream 7786 74848062 ~ 74848291 (+) True G1111041
TU1263211 lncRNA downstream 1003 74857458 ~ 74857807 (+) True G1111049
TU1263212 lncRNA downstream 1523 74857978 ~ 74858222 (+) True G1111050
TU1263219 lncRNA downstream 2734 74859189 ~ 74859511 (+) True G1111053
TU1263224 lncRNA downstream 9966 74866421 ~ 74866992 (+) True G1111057
TU1263227 lncRNA downstream 13757 74870212 ~ 74870828 (+) True G1111059
XM_021625189.2 mRNA upstream 24083 74792413 ~ 74831994 (+) False LOC110538397
XM_021625188.2 mRNA upstream 24084 74792419 ~ 74831993 (+) False LOC110538397
XM_021625190.2 mRNA upstream 24084 74792428 ~ 74831993 (+) False LOC110538397
XM_036938414.1 mRNA upstream 24084 74811457 ~ 74831993 (+) True LOC110538397
XM_021625191.2 mRNA upstream 71492 74776771 ~ 74784585 (+) True LOC110538398
XM_021625185.2 mRNA downstream 74407 74930862 ~ 74933801 (+) True LOC110538393
XM_021625183.2 mRNA downstream 84864 74941319 ~ 74942346 (+) True LOC110538391
XM_036938417.1 mRNA downstream 103582 74960037 ~ 75102995 (+) False LOC110538388
XM_036938418.1 mRNA downstream 103582 74960037 ~ 75102995 (+) False LOC110538388
XM_036938419.1 mRNA downstream 103582 74960037 ~ 75102995 (+) False LOC110538388
TU1261780 other upstream 1009283 73846255 ~ 73846794 (+) True G1109786
TU1261764 other upstream 1021471 73833643 ~ 73834606 (+) True G1109778
TU1261395 other upstream 1470210 73384808 ~ 73385867 (+) True LOC110538462
TU1261422 other upstream 1549923 73305425 ~ 73306154 (+) True G1109505
TU1257805 other upstream 2837787 72017593 ~ 72018290 (+) True LOC110538241
TU1263295 other downstream 103811 74960266 ~ 75048356 (+) True G1111126
TU1264041 other downstream 562334 75418789 ~ 75423163 (+) True G1111805
TU1264215 other downstream 888684 75745139 ~ 75745620 (+) True G1111961
TU1264225 other downstream 894415 75750870 ~ 75753593 (+) True G1111970
TU1264251 other downstream 927895 75784350 ~ 75786987 (+) False LOC110538360

Expression Profile