RNA id: XM_036939734.1


Basic Information

Item Value
RNA id XM_036939734.1
length 1848
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC118938065
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 30523932 ~ 30552653 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCCAGTGCTCCCCAGTGTCTTCAGAGCCAGACGGGACCCAGCCGAGGTAGAGGGAGCCCCTACAACAATCGATCCCGTGGGAACCCCTGCACCAACAGAGCTACACAGAATACCCATATCCATCCGACTGAACATAATACCCACACAAACAGAGACGTGCAAACACAACACACTAATCAATCCAGTGGAAACCCCTACAACTATCAATCCAGCGGGAACCACGGCACCAACCAAGCGAGACGGAATCCCCATATCTTTACGACGGAACCTAATCCCCACACCAACAGAGCCAGGCAAACCATCCACACCAACCAATCCAGTGGGAATCCCTACACCAACCAATCTAGTTGGAACTCCTACAGCAATTGATCCATCAGGAACCCCTGCACCAACTATGCTAGACAGAATCCCCACATCCATCAGCCTGAACAAAATTACCAGACTAACAGAGCCAAGCAAACACTCCACATCAACCAATCCTGTGGGAACCCCTTCACCAATTAATTCAGTGGGGACCCCTGCACCAGCCAAGCTAGACGGACTCCCCACACCAACAGACCCAGGAAAACCCTCCACATCAACCAAGCTAGACGGAATCCCCACATACATCTGCCTGAATGGAATCCCCACATCCATCTGCATGAACGGAACCCCCACCTCGATACAGTCCAAAATCCCCAGACCAATACAGCCCAAAATCCCCAGACCTATACAGCCAAAATTCCCCACACCAATACAGCCAGGCAAACCCTCCACACAAAATAATCCAGTGGGAACCCCTATACCAATTGATGAAACATCTGACTCCTCTGAGCACCAGGACCAAGAAATGCAAAGGCCAAAAAGAAAAATGTGGACAGAGGGAGATCTAATCGTTGCTGAAGACGGTGCAACCATTCAAGCACAAAAGAAAATCAAAACAACAGAAGAGTGGCTGAACATGGATACGGATAGGCCCACGGTGTCAAGACATGCAGAGGTAGACACCGAAATATTAGATCAACTAGAAAAACACAAAGAAGAGTCGCTGAACATGGATACGGATAGGCCCATGGTGTCAAGACATGCAGAGGTAGACACTGGAGTATTAGATCAATTAGAAAAGAGCAGCATTGTACAAGCAACCAACAAGCAAACTTTGTGGGCTATAAACTGCTTTAAGGACTGGCTGGCAGAGAAACAGATGATAGTGGATTTTTCAACCATTGAGAAATCTGAAATGAATGTCCTCTTGCGAGATTTTTACTGTTCTGTTCGAAGGGGTAAAGGTGGGGAGTATTGCATCCCAAGCTATATCGGAATCCGGGCTGGCGTGAACAGATTCATTAACCTCCCTCCCCTTAGCAGATCCTGGTGCTTGATGAAGGACAGTGAGTTTACCTCCTCTAATAATGTATTTCTTAGGGTACTAAAGAAACTCAGACGAGAGGGCAGGGACAAAACTACCCATCCTAAGGTGATTACAGCACAAGaccttgagattcttcaaaactCTACTGTGCTAAGCCCCTACACACCCAGAGGACTAGTGAACAAAGTGTGGTTTGATATCCAGTTACACTTTGGCCCCAGAGGAAAAGAGGGCAATAGACGGCTAAGGCCACAGTCGTTTGTAATAAGcgctgggcaggcgggagactccgccAGCGCTgggcaggcgggagactccgccAGCGCTgggcaggcgggagactccgccAGCGCTgggcaggcgggagactccgccAGCGCTgggcaggcgggagactccgccAGCGCTGGGCAGGCGGGAGACTACGCCAGCGCTGGGCAGGCGGGAGACTACGCCAGCGCTgggcaggcgggagactccgccAGCGCTGGATGa

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1326935 lncRNA upstream 1934 30521791 ~ 30521998 (+) True G1163565
TU1326929 lncRNA upstream 4815 30518812 ~ 30519117 (+) True G1163559
TU1326922 lncRNA upstream 10323 30513115 ~ 30513609 (+) True G1163552
TU1326919 lncRNA upstream 12042 30511552 ~ 30511890 (+) True G1163549
TU1326911 lncRNA upstream 16535 30507098 ~ 30507397 (+) True G1163541
TU1326975 lncRNA downstream 1966 30554619 ~ 30572149 (+) False G1163599
TU1326977 lncRNA downstream 1966 30554619 ~ 30572247 (+) False G1163599
TU1326982 lncRNA downstream 1966 30554619 ~ 30572338 (+) True G1163599
TU1327087 lncRNA downstream 78840 30631493 ~ 30688745 (+) False G1163669
TU1327089 lncRNA downstream 78840 30631493 ~ 30648903 (+) False G1163669
XM_021557423.2 mRNA upstream 240887 30264043 ~ 30283045 (+) False LOC110486082
XM_021557424.2 mRNA upstream 240887 30264043 ~ 30283045 (+) True LOC110486082
XM_021557422.2 mRNA upstream 284686 30177711 ~ 30239246 (+) True LOC110486081
XM_021557420.2 mRNA upstream 381522 30130837 ~ 30142410 (+) False LOC110486080
XM_021557421.2 mRNA upstream 381522 30130837 ~ 30142410 (+) True LOC110486080
XM_036940737.1 mRNA downstream 27265 30579918 ~ 30598703 (+) True LOC110486087
XR_002468032.2 mRNA downstream 297927 30850580 ~ 30852604 (+) False LOC110486099
XM_036940745.1 mRNA downstream 352145 30904798 ~ 30962319 (+) False LOC110485141
XM_036940748.1 mRNA downstream 352145 30904798 ~ 30962319 (+) False LOC110485141
XM_036940749.1 mRNA downstream 352145 30904798 ~ 30962319 (+) False LOC110485141
TU1326020 other upstream 692636 29830754 ~ 29831296 (+) True G1162753
TU1325585 other upstream 1029030 29494362 ~ 29494902 (+) True G1162364
TU1325047 other upstream 1152985 29364052 ~ 29370947 (+) True si:ch211-126j24.1
TU1325076 other upstream 1224276 29298758 ~ 29299656 (+) True G1161908
TU1322806 other upstream 1704484 28818734 ~ 28819448 (+) True G1159924
TU1327390 other downstream 561658 31114311 ~ 31119677 (+) True LOC110486104
TU1328699 other downstream 1449098 32001751 ~ 32110733 (+) False LOC110486134
TU1329495 other downstream 2162603 32715256 ~ 32722462 (+) True ifn2
TU1329888 other downstream 2676460 33229113 ~ 33230483 (+) True LOC110486146
TU1330025 other downstream 2687300 33239953 ~ 33249208 (+) False G1166318

Expression Profile