RNA id: TU1326977


Basic Information

Item Value
RNA id TU1326977
length 1378
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G1163599
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 30554619 ~ 30572338 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTAGGGTTGGGTGGCCAACGTTTGTTAATTCAACCGATACCTTTCCTAGTGGGCAAGTACACTTCTAGATACACATTGTCTAAAAATGTAAGTCTTTAATAGATAGAGCTAAAGATGGATTGAAAATTGGATTTAACAATGGACGTACAGTTGGCTATTTCTGCCGTTATATTATTCATGGTTGCACATTTGCACATTGTTGGGCCAAATAACCATGTCGATCAGGTGGCCACCGGACTAATCCTGAGAAATCATTTCAAGGGATAGATCGTTGTCATTGAGAAGGGCCTTGTTACAGTTCCATTGCAACAGGTCTCCAGCAAAAACAACCTCAATTGTGGAACGGGAGAATGTAAAATTAGAGAGGCGGTCGTGCGTATAATAGACGGGCGACAGAAAAAGGAATAAACTAGATCTGATGTCACTGCTCTGTTGGATTATCGAATACGTGAGGGATTTAATATCCTCGAATCGAAGATAGCAGTAGCCAACGTTGCATGTGATACGTTGCCAATATGATGCCGgacctgagccctaggaccatgcctcaggactacctgacatgatgactccttgctgtccccagtccacctggtcatgctgctgctccagtttcaactgttctgccttattattattggaccatgctggtcatttatgaacatttgaacatgttctgttataatctccacccggcacagccagaagaggactggccaccccacatagccttgttcctctctaggtttcttcctaggttttgggttttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtagctgaagggctatataaattgatttgattttgtttcccttgctctgcatgggtaactctgcttcgatggtggctgttgtcgatgtgttgctgattcgagcccagggaggagcgaggagagggacggaagctatactgttacactggcaatactaaagtacctacaAGAAAacccaatagtcaaaggttaatgaaatacaaatggtatagagggaaatagtcctataattcctataataactacaacctaaaacttcttacctgggaatattgaagactcatgttaaaaggaaccaccagctttcatatgttctgagtaaggaacttaaatgttagctttcttacatagcacatattgcacctttaccttcttctccaacactttgtttttgcattatttaaaccaaattgaacatgtttcattatttacttgaggataaattgattttattgatgtcttatgttaaaataagtgttcattcagtattgttgtaattgtcagtattagaaatacataaataaatattgtCCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1326960 lncRNA upstream 12778 30541629 ~ 30541841 (+) True G1163588
TU1326953 lncRNA upstream 16484 30537932 ~ 30538135 (+) True G1163581
TU1326945 lncRNA upstream 26158 30528016 ~ 30528461 (+) True G1163573
TU1326935 lncRNA upstream 32621 30521791 ~ 30521998 (+) True G1163565
TU1326929 lncRNA upstream 35502 30518812 ~ 30519117 (+) True G1163559
TU1327087 lncRNA downstream 59246 30631493 ~ 30688745 (+) False G1163669
TU1327089 lncRNA downstream 59246 30631493 ~ 30648903 (+) False G1163669
TU1327097 lncRNA downstream 77793 30650040 ~ 30714455 (+) True G1163674
TU1327088 lncRNA downstream 83122 30655369 ~ 30707608 (+) True G1163669
TU1327112 lncRNA downstream 116702 30688949 ~ 30750735 (+) False G1163687
XM_036939734.1 mRNA upstream 1966 30523932 ~ 30552653 (+) True LOC118938065
XM_021557423.2 mRNA upstream 271574 30264043 ~ 30283045 (+) False LOC110486082
XM_021557424.2 mRNA upstream 271574 30264043 ~ 30283045 (+) True LOC110486082
XM_021557422.2 mRNA upstream 315373 30177711 ~ 30239246 (+) True LOC110486081
XM_021557421.2 mRNA upstream 412209 30130837 ~ 30142410 (+) True LOC110486080
XM_036940737.1 mRNA downstream 7671 30579918 ~ 30598703 (+) True LOC110486087
XR_002468032.2 mRNA downstream 278333 30850580 ~ 30852604 (+) False LOC110486099
XM_036940745.1 mRNA downstream 332551 30904798 ~ 30962319 (+) False LOC110485141
XM_036940748.1 mRNA downstream 332551 30904798 ~ 30962319 (+) False LOC110485141
XM_036940749.1 mRNA downstream 332551 30904798 ~ 30962319 (+) False LOC110485141
TU1326020 other upstream 723323 29830754 ~ 29831296 (+) True G1162753
TU1325585 other upstream 1059717 29494362 ~ 29494902 (+) True G1162364
TU1325047 other upstream 1183672 29364052 ~ 29370947 (+) True si:ch211-126j24.1
TU1325076 other upstream 1254963 29298758 ~ 29299656 (+) True G1161908
TU1322806 other upstream 1735171 28818734 ~ 28819448 (+) True G1159924
TU1327390 other downstream 542064 31114311 ~ 31119677 (+) True LOC110486104
TU1328699 other downstream 1429504 32001751 ~ 32110733 (+) False LOC110486134
TU1329495 other downstream 2143009 32715256 ~ 32722462 (+) True ifn2
TU1329888 other downstream 2656866 33229113 ~ 33230483 (+) True LOC110486146
TU1330025 other downstream 2667706 33239953 ~ 33249208 (+) False G1166318

Expression Profile