RNA id: XM_036940737.1


Basic Information

Item Value
RNA id XM_036940737.1
length 3377
RNA type mRNA
GC content 0.61
exon number 19
gene id LOC110486087
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 30579918 ~ 30598703 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGATGTTCCTCACCGTGTACCTCAGCAACAATGACCAGCATTTCACAGAGGTGCCCGTTACCCCGGAAACCCTGTGTCGTGATGTGGTGGAGCTGTGCAAGGAGCCGGGGGAGGGAGAATGCTTCCTAGCTGAAATGTGGCGAGGCTCAGAGCGCGCCATTGGTGACGGAGAGCGAATGCTGGACGTGCTCCAGCGTTGGGGACACCAGAGGGGGGAGGTGCGCTTCCTCCTGCGCCATGACCGGGTACCCTGCAGAGAGTCAGGCGGATCAAGGGTTTCCAATCCCTCCGCTAAAAGGAATATGGTCAAGGTGCCTGTGGACCGATGCATGGAGAATGGGgtggcaCCACCTTGCATGGACATCACCCTCTCGGAGCTGCAGGAGTTGGCGTCACGGCAACAGCAGCAGATCAATTCGCAGCAGCAGCTCCTGGCCTCAAAGGAGCAACGTCTGCGCTACCTGAAgctgcaggagcagcagcagcaggcgtCAGAGCATGAGAGACTACTGCAGCTTCGTGAGAATGCTGAGAACCAGGAGACCAAGCTGCGGCGGGTGCGGGCCCTCAAGGGTCAAGTGGAGCAGAAACGCCTTAGCAACAGCAAACTGGTGGAGGAGATAGAGCAGATGAACGGGCTGTTTCAGAGTAAGCAGTGCGAGCTCCTGGTGGCCGTCTCGAGAGTGGAGGAGCTGAGCAGGCAGCTGGAGACCCTGAAAAGCGTCAAGATGGAGCCCTCTCATGATGGCCCGAGCTCCGCCGGCGAGCTGGAGCGTCTTTACAAGGAGCTGCAGCTGAGGAATAAGCTGAACCAGGACCAGAGTGCCAAGCTGCAACAGCAGCGTGAGAGCCTGAGCAAGCGCAACCTGGAGGTGGCCACCATGGACAAGCGAGTGGCCGAACTCCGCGAACGCCTGTGGAAGAAGAAGGCAGCGCTACAGCAGAAGGCGAACTTGCCCGTCCCCACAAAGAGCCAGGCCCTGCAGCCATGTGGCCCTTCCAGGGTGGCGGCCGTGGGCCCTTACATCCTGTCCTCCACTGCGGCCCCAGGGTCTCCGGTGCCCAGCCGACAGGAGCTGCTGATCAAGCCTGCCTACCCCGACGGCACCACCACCTTACCCATGCCAGACTCCTCCATGAAGGCCCCTCCTAGACCGCTTAAACCCTACTCAGCTCTGACAGGTTTTCAGTCATCCAAGACGTCTCAGCTGTCCGACTGGTCCAGCTCCAGAGCAGAGTCCAGCGGCAGTCATCATGGCATGTCCTCAACTCTGCCTCGCATGTCCAGCCTCTCCTCACAGGGCTCAGGAGACGCCGAGACCCTCAAGGGCCAAAAGGGGCGTCACATTTCTATGTTTGACGCCCCGGCTCCCGTCCACTCACAGAACAATCAGAGCAGCGAGGACCTCTTGAGGGATACCCAGGCGGGTGGTAAGGCTCTCGGCAAGGTGCCACCTCCTATCCCTACCAAGCCCCCGACTTTCGGCAAACCGCCTTACAGCACGGGCACCTTCCCGGGCAAGGCAAAACCGTCCGCCTCCCTCCATCTGTGTGCACCTCCGCCCATCCACAGCCACACCCTGCCTCTGCCAACCAAGCAGGAGGCTCCTCCGGCGGCTACGGTGCGCCCCTTCACCCCGGATCCTCCAGAGTCCACAGCGGCAGTGCCTGTCCTCCAGAAGCCACAGACGGTGGCTGCCTCCTCCATCTACTCCATGTACACCCAACAGCCCAGGACAGGTGGGGGCACTCTGACACGCACGCAGCCCAGAGTGTATGGAAAACCAGTCATCTCAGGCAGTGGGGGGCAGCAGTCGCTCCTCCAGGACTCCACCTATTTGGGGGCCGGCGATTTCGAGGTGGACCAGGGGGGTCCCGGCCTGGCGTCTCTGGCACCTGAGAGCCAGTGGGGCCAGGAGACGGAGCGGGCCCCTCGTCCCCTCAGCCCCACCaagctcctccccttcatctcgcACCCTCACCGGCACCCCAGCGACGCCGACCTGGAAGCCCTGCGCCGTCGGCTGCACCATGCCCCGCGACCCCTCAAGAAGCGCAGCTCCATCACAGAGCCTGAGGGCCCTGCGGGGCCCAACATCCAGAAGCTTCTCTACCAGAAGACCACACTGGCCGCCATGGAGACTGTTGTGGCGTTTCCATACGAGGGTGAAGGTGGAGGAACATGGAAGGAGGAGCCCCAGACTGCACTGGTACGTCCCAAGTTTTCCACTGCCGGTGGAGCCCCAGACGTCCCAAGTTTTCCATGCTGCAGCGTCCCTCgctaccctgccgccccagatgcACAGGTGCCCCCCCGCTCGCCCATCCCAGagccctctttctcctccagccACACCATGCCCCCGTCGCTGGAGGAAGAGGTGCCAGATCCCTGCCACCCGCCCCCCCATCAGCCAGAAGCCTACTTGGAGGAGTACCCGCCCTACCCGCCCCCTCCATACCCCAGCGAAGGGGAGCAGGACCTGGGGGAGGACACCCTCAACATGAAGGCTCCGGAGGTCACGGGACAGGTCACTCTGCCTCCGGGCAAGAGGACCAACCTGCGGAAGGTCGGCTCGGAGCGCATCGACCACGGCATGCGGGTCAAGTTTAAccccctgtccctgctgctggACTCATCTCTGGAGGGCGAGTATGATCTGGTGCAGAGGGTCATCTATGACGTGGATGACCCCAGCCTGCCCAATGACGAGGGCATCACAGCCCTGCACAACGCCGTCTGCGCCGGCCACACCGAGATCGTCAAGTTCCTGGTGCAGTTTGGCGTGAACGCCAACGCTGCCGACAGTGATGGCTGgacTCCACTGCACTGTGCGGCCTCCTGTAACAATGTGCAGGTGTGTAAATTCCTGGTGGAGTCCGGGGCTGCTGTGTTCGCCACCACCTACAGTGATATGCAGACAGCGACAGACAAGTgcgaggagatggaggagggctaCGCACAGTGCTCCCAGTTCCTCTACGGTGTACAGGAGACGATGGGCATCATGAACCGTGGGGTGGTGTACGCCCTATGGGACTACGAGGCTGAGGACGATGACGAGTTGGCCTTCCAGGAAGGCGACTGCATGACGGTGCTGCGGCGCGAGGACAAGGACGAAGAGTGGTGGTGGGCACGCTGCGGAGACCGAGAGGGCTACATTCCAAGAAACCTGCTAGGGCTGTATCTGAGGATCAAGCCACGGCAGAGGAGCTTGGCTTAAATTATGTCGGCTCACGTTCCACCCTACTCGCTAAAAACTACTCCGACTCGAAGAAGTTACTTTTTGAAAGGCGAATGAAGAACCTACTTCTGGTCTTTTGGATGTCAAAGTCAAGCATTCCACTTCAAGCTTTTGGACCTGTCTGTGAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1326982 lncRNA upstream 7580 30554619 ~ 30572338 (+) True G1163599
TU1326977 lncRNA upstream 7671 30554619 ~ 30572247 (+) False G1163599
TU1326975 lncRNA upstream 7769 30554619 ~ 30572149 (+) False G1163599
TU1326960 lncRNA upstream 38077 30541629 ~ 30541841 (+) True G1163588
TU1326953 lncRNA upstream 41783 30537932 ~ 30538135 (+) True G1163581
TU1327087 lncRNA downstream 32790 30631493 ~ 30688745 (+) False G1163669
TU1327089 lncRNA downstream 32790 30631493 ~ 30648903 (+) False G1163669
TU1327097 lncRNA downstream 51337 30650040 ~ 30714455 (+) True G1163674
TU1327088 lncRNA downstream 56666 30655369 ~ 30707608 (+) True G1163669
TU1327112 lncRNA downstream 90246 30688949 ~ 30750735 (+) False G1163687
XM_036939734.1 mRNA upstream 27265 30523932 ~ 30552653 (+) True LOC118938065
XM_021557423.2 mRNA upstream 296873 30264043 ~ 30283045 (+) False LOC110486082
XM_021557424.2 mRNA upstream 296873 30264043 ~ 30283045 (+) True LOC110486082
XM_021557422.2 mRNA upstream 340672 30177711 ~ 30239246 (+) True LOC110486081
XM_021557420.2 mRNA upstream 437508 30130837 ~ 30142410 (+) False LOC110486080
XR_002468032.2 mRNA downstream 251877 30850580 ~ 30852604 (+) False LOC110486099
XM_036940745.1 mRNA downstream 306095 30904798 ~ 30962319 (+) False LOC110485141
XM_036940748.1 mRNA downstream 306095 30904798 ~ 30962319 (+) False LOC110485141
XM_036940749.1 mRNA downstream 306095 30904798 ~ 30962319 (+) False LOC110485141
XM_036940746.1 mRNA downstream 306272 30904975 ~ 30962319 (+) False LOC110485141
TU1326020 other upstream 748622 29830754 ~ 29831296 (+) True G1162753
TU1325585 other upstream 1085016 29494362 ~ 29494902 (+) True G1162364
TU1325047 other upstream 1208971 29364052 ~ 29370947 (+) True si:ch211-126j24.1
TU1325076 other upstream 1280262 29298758 ~ 29299656 (+) True G1161908
TU1322806 other upstream 1760470 28818734 ~ 28819448 (+) True G1159924
TU1327390 other downstream 515608 31114311 ~ 31119677 (+) True LOC110486104
TU1328699 other downstream 1403048 32001751 ~ 32110733 (+) False LOC110486134
TU1329495 other downstream 2116553 32715256 ~ 32722462 (+) True ifn2
TU1329888 other downstream 2630410 33229113 ~ 33230483 (+) True LOC110486146
TU1330025 other downstream 2641250 33239953 ~ 33249208 (+) False G1166318

Expression Profile