RNA id: XR_005035584.1


Basic Information

Item Value
RNA id XR_005035584.1
length 938
RNA type mRNA
GC content 0.52
exon number 2
gene id LOC118938315
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50867328 ~ 50868744 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGTAACCCAGTACGATTTCCTGCAAATTCCAAAGGCAGATCCCTGCTGGAACATTTCAACCCGCCTGCCACGTCAGTTTGCTTCCACCATCCTCCCTCgctccttctcctcttctgctccttctctttctctcgctctttccgcCACAGAGGACTGGTCAAAACTGAACGGTACTAGTTGTTTTGAGGCGTAGTCAGAGTGACAGGTTAAAGGTTTGTCTTCAGCTCTGGTCAGCGGTATCTTTTGAAGCTCTGTGTTTCGCTGAGAGAGGGGACATCTTCGCCAAGGCCTGGGCTGCTCTGACCGAACTAATGGGCAGTGACCTGCAGCCGGAGCGACCCCGCGGACcttcccccctcctcacccccccgCCTGCCCAGTGTTCAGACTACCTGTTCATCAGGCTGAAGCTGAACAGTAGTCTGCACATTGGTTAGGCTGGgccgggacacacacacaggacacatcTAACTACCAGCCAGCAGGGGCTCTGGTGAGAGGCTCTGGCCGGGTCTGATTCTCCACCATGAcaatgagagggaggagggagcatGCAATGCAGATCATATATCAGCCCATGGAGTAGTAGCAGAATCTTTCTGACAGTTTGTATTGTACTATTTTGTGTTGTACTTATCCCAGCGTTAGACACTCACCTCCTCATCCTTGTACCAGGATAGTGACTCTGCGGTCAGGACGAACCAGTACTCCTTGGAGCCTCCCTTCATGATGCTGATGTTGATGGTGAGCCAGCCTTTGCGGATGACCTGTTAGGGGAGAGATAGGGGTGGGGGAACAGGGGAGCGAGGGGTGGTGGGGGACAAGGTATACCAGGAGGATGGAGGGAAAACAAGTCATTAAAGTACTCATGATTTACCTCCTGGAGATCTTGTGATATGACTAACTTAACTGACCAATAAAAACCTTACCTGGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1351420 lncRNA downstream 43262 50789601 ~ 50824066 (-) True LOC110485208
TU1351449 lncRNA downstream 80528 50785477 ~ 50786800 (-) True G1185048
TU1351413 lncRNA downstream 158201 50708892 ~ 50709127 (-) True G1185012
TU1351379 lncRNA downstream 158610 50707867 ~ 50708718 (-) True G1184978
TU1351380 lncRNA downstream 163346 50703479 ~ 50703982 (-) True G1184979
TU1351531 lncRNA upstream 67614 50936358 ~ 50936584 (-) True G1185123
TU1351573 lncRNA upstream 121629 50990373 ~ 50991627 (-) True G1185154
TU1351544 lncRNA upstream 134747 51003491 ~ 51007735 (-) True G1185128
TU1351614 lncRNA upstream 195379 51064123 ~ 51082403 (-) True G1185194
TU1351684 lncRNA upstream 304304 51173048 ~ 51173497 (-) True G1185256
XM_021558541.2 mRNA downstream 34620 50827395 ~ 50832708 (-) True LOC110486728
XM_036941419.1 mRNA downstream 42895 50732097 ~ 50824433 (-) False LOC110485208
XM_036941420.1 mRNA downstream 42895 50732097 ~ 50824433 (-) False LOC110485208
LOC118938085 mRNA downstream 137233 50719812 ~ 50730095 (-) True LOC118938085
XM_021558516.2 mRNA downstream 170238 50690182 ~ 50697090 (-) True LOC110486719
XM_036941431.1 mRNA upstream 7771 50876515 ~ 50883694 (-) True LOC110486730
XM_036941436.1 mRNA upstream 141875 51010619 ~ 51062287 (-) False LOC110485210
XM_036941435.1 mRNA upstream 141875 51010619 ~ 51096139 (-) False LOC110485210
XM_036941434.1 mRNA upstream 141875 51010619 ~ 51230197 (-) True LOC110485210
XM_021558557.2 mRNA upstream 456162 51324906 ~ 51328763 (-) False LOC110486734
TU1351447 other downstream 85470 50780265 ~ 50781858 (-) True G1185046
TU1351422 other downstream 109284 50756638 ~ 50758044 (-) False LOC110485208
TU1351387 other downstream 238789 50626647 ~ 50628539 (-) True G1184986
TU1350091 other downstream 1030996 49835663 ~ 49836332 (-) True LOC110486698
TU1349952 other downstream 1178872 49685338 ~ 49688456 (-) True G1183706
TU1352616 other upstream 453056 51321800 ~ 51323931 (-) True G1186080
TU1352611 other upstream 483565 51352309 ~ 51373954 (-) True G1186075
TU1352690 other upstream 621033 51489777 ~ 51490241 (-) True G1186154
TU1352963 other upstream 1056219 51924963 ~ 52028974 (-) False G1186381
TU1352758 other upstream 1141946 52010690 ~ 52011211 (-) True G1186216

Expression Profile