RNA id: XR_005035610.1


Basic Information

Item Value
RNA id XR_005035610.1
length 4302
RNA type mRNA
GC content 0.59
exon number 20
gene id LOC110486859
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 56911365 ~ 56957646 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTCGGGGGTTGGCTAGAACAAGTGTCACTCATTAAGCGCTCTGTAACTAGCTGGCTAAACATGTGGATCCTCAATGAGCACTGTTTAGCGTGAGAAGTGTGCCTCTTGGGCATCAATATGAAGACAGAAGAAGGCACTATTTGACAGATCAATAACAGAGTTTATCTCACTGGAATTATTGCAAATGTAGCTAGATACGATTTCCACTTAAATCGATGTTTGTGTAAGTTTTTAGCCACAGTGATTTATCTAACCATAACGAGACAGCAAAAATGAACTTGTCTTTTGACGATCAGTCACTGGATAATCTGGATCCAACCATATCCCTAAATGACCCCAGCGATATTGACACGGCTCTGCTCAATGACATTGATGACATGCTGCAGCTCATCAACAACCAGGACATGGTGGAGTTCAACCAGGACATGGCGGGTCTCTTTGACCCCCCTCAGTTCACAGGGGTCACCCCTACCCAGGACCTCCCTGCCCTCAGCCTGCCCCactccaccacctcccctccatcCACCACCTCCTCAATCCTGAGCAGCAGCCCCCACCTTGATGCTCTCCTGGGGCCCCCCATCATCCGCAGTTCCTCCCCCCCAGACAAGGCCTTCCACCCCCCCACCTTCCAGCAGTCACCCCTGGCCCAAGTCACCACCTCCACCCCTGTACCACTACCTAGGCCGCAGCCAGCTCCCCAGCAGGGCTCTCCATCAGCCCAGGCTGCTCAGGGTCTCAGGGAGTCCAAGGTGGACCTGCCCCTGCCGGTCCTCTCCCCCCCAGCCCCTGTTCCAGTCCAGCTTCCTCCCCCAGCCTCTTCCCCCCATACTGTACCCGGCCAGAGCCCCGTGTTCAGCGCCGCCCCCCAAGCCCTGTTCACCTCTCCTGCCCCCCAGCAGTCCCAGGCCCACACCCAGCAGATACGGATTAACTACAGCACCCACAATGGCTACAAAGCTGTCAATCATCAAGGAGGCCCCGCCCAGCCCATGGTCAGCCTGTCGTCGTCCCCTTCCGGTGTTCAGCCAATGACCATCCAGGCTCTGACCACCACGGCCCCCCTCCTGACCACCTCAGCAAGCCCCCCAGCTCAGACCATCGCATCACATCACATTCAACAAgtATTGCTCCAGCCCCAGTTTATCAAGGCTGAGTCTCTGCTGCTTACCACCCTGAACCGTGACCCCTGTATGGTCACTACTGTGGCCTCTCCATGCATCACCTCCCTGGCCACCACCACATCCCAGAGCACCCACTCACTGCAGgCTCTGATGAGTGGTGGCACCTTCCTGACCACAGTGCCAGTGATGATGGACTCTGACAAGCTGCCCATCAACCGTATCACAATCAGCAGTAAACCTATGGGCCTGCCCCCCAAGGGCGAGAAGCGCACCGCCCACAACGCCATCGAGAAGCGCTACCGCTCATCCATCAACGACAAGATCCTTGAGCTTAAAGACCTGGTGGCCGGGACTGAGGCCAAGCAGCTCAACAAGTCAGCAATTCTGAAGAAGGCAATAGACTACATCCGCTACCTGCAGCAGTCCAACCAGAAACTGAAAAAAGAGAACATGGCCCTGAAGATGTCTGCCCAGAAGAACAagtCTCTGAAGGACCTGGTTGCCATGGAGGTGGATGGCCCACAGACGGACGTAAAGAGCGAGCTACCCACCCCGCCGCCATCCGACGTGGGCTCTCCCACCTCCTACTCCCACTGTGGCAGCGACTCAGAACCCGACAGCCCCATGGGGGAGGACAGCAAGCCGGCGGTCAATCTGATGGACACGTCCTCATCCACTCCGGGCAGTGCTGGCATGCTGGACCGCTCCCGCATGGCGCTGTGCACATtcaccttcctcttcctctccctcaatCCCCTGGCTGCCATGCTGTGTGGAGGGATGGGCTCcagcaccaccgctaacaacCAAGCAGTGCATCCTGGGACAGGCAGGATCATGCTGGGCCTAGACAAcgcagCTGACTCGTGGGGCTGGATGGACTGGGTGCTACCCACTCTGTTGGTTTGGCTGCTGAATGGTGTGCTGGTGGCTGGGGTTCTGGTCAGAGTGCTGGTCTATGGAGAGCCAGTCACCAGGCCCCACTCTGGATCCTCCGTGCTGTTCTGGAGGCACCGCAAGCAGGCAGACCTCGACCTGGCACGGGGAGACTTTGCCCAGGCCAGTCAGAACCTATGGACCTGCCTCAAGGCCCTGGGTCGCCCCTTACCCACCTCTCAGTTGGACCTGGCCTGTGCCGCCCTGTGGGCCCTGCTCCGCCTCTGCCTCCAGCGACTAGGGGTGGGTCGCTGGTTGGCTGCCAGGGCTGGGGGGCTCCGCGCCAGGGGGCTCCGGGAGGATGCTCGCATGAGCAGCCGCGACGCTGCCCTGGTCTACCACCGCCTGCACCAGCTGCACATGACCGGTAAGCTGGGCGGTAGCCACCTGTCTGCGGTTCACATGGCTCTGAGTGCTGTAAACCTGGCCGAGTGTTCAGGCTCCTGTCTCCCCGTGGCCACGCTAGGAGAGATCTACGTCTCTGCAGCCCTACGAGTCAAAGCCAGCCTACCCAGACTCCTTCACTTCTCCTCCcgTGTGTTCCTGAGCAGTGCCCGCCAGGCGTGTCTCTCCTCCAGTGGCAGTGTCCCCCCGGCCATGCAGTGGCTCTGTCACCCTCTGGGCCACCGCTTCTTTGTGGACGGGGACTGGGCCGTCCGCAGCACCCCCAAAGATAGCATCTACAGCCAGGCAGGGAACACAGTGGACCCTCTGGCCCAGGTGACCCAGGCCTTTAGGGAACACCTTTTGGAGAAGGCTCTATACTGTGTGGCCCAGCCCCGGGGGGAGAAGACCCCCAGTGATGGAGAAGGGGAGTATGCGGATGCTCTGGAGTACCTTCAGCTGTTGACTAGTGCATCAGACGCCGCCGGAGCCAACACCCAGTCCTTCGCCATCGGATCCAACATGGCCACCGTCACTGGCTGTGACCTTCATTCCAAATGGTGGTCGTCGGTTGCCGTGGTGATCATTAACTGGCTCCAAGGAGACGACGCAGCGGCTGAGAGACTGTACCCCGCCGCCGAGCACCTGCCCCGTAgtctacagactgcagaGAGTCCGTTGCCCAAGGCGTCTTTGAACACGTTCCGAGCGGTGCGCGCCATGCTGACCAAACCAGAGAACTGTCAGCTGAGTCTGAGCCACAGTGAGAGGGCCAGCGGCCTGCTGAGAGACAGCCTCAACCTGGGACCACACTGTCACAGCAGCAGCCTagacaaggtggTCCAGTTGCTGCTGTGTGACCTGCTGCTGGTGATGCGGACTAACGTGTGGCGTCTGCAGCAGAGCTCCAGTCCCGGGGGTCTCTCCTTGCAGGCCTCCCCGGCCGAGCTGCACGGCTTCCAGCAGGACCTCTCCTCCCTCAGGAAGCTGGCCCAGAGCTTCAGGCCCGCCATGCGCAGGttgTTTCTTCATGAGGCAACCGCCAGGCTGATGGCTGGGGCCAGTCCCACACGAACACATCAGCTCCTGGACCGCTCGCTCAGACGCAGAGCCACCCCCGGAGCCAAGACGGAGGAGTGTGAGATGCGTCCTGGCCAGAGGGAGCAGGCTGAGGCGGTGATGTTGGCGTGTCGCTACCTGCCCCCCTCCTTCCTGTCGGCACCGGGCCAGCGGGTGGGCATGCTGGCGGACGCAGCGCGGACACTGGAGAAGCTGGGGGACAAGCGCACCCTCCACGACTGCCAGCAGATGATCATTAAGCTGGGCAGCGGCACCACTGTCACCTCTGCCTAGACGAtacagagcgaggcagagagaccagccccacacacacacacacacacacacacacaaatggatgGAGGTTTTTGGCATTTGGCCTGCAGCTGAcgaacagacatacagacagtctAACTAGACATTGAGAATCATATCAGGCATACAGACAGACGAATGAACATACCTGACAGTTACCTGCCATTAGTTTCATATCACCTGTCAGTAGACAGCTCTCAGAGTGACAGTTTAGCAGGGGAGGACTTCACCCCAGTAAAGTGTTGCTGTTGACATTGTTGACATGATCTGCAATGTAAGCTAGTCATCATCCACCAGGATATATAGGTTCACGGTTCTGGTTCTTTTCTATTCCCCTGCGTGAAATGCACTGTAGTGGCGGAGTGTGTCCACTGGGTGGGGTTCTGGCGCCCTCTGCAGGACTGTGAAGGTGTGAtggctgggagtgtgtgtgtgtgtgtgagagagagagagagagagggagagagagagagaaggaaggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1357466 lncRNA downstream 103252 56807689 ~ 56808113 (-) True G1190123
TU1357465 lncRNA downstream 103727 56807407 ~ 56807638 (-) True G1190122
TU1357462 lncRNA downstream 108448 56802674 ~ 56802917 (-) True G1190119
TU1357449 lncRNA downstream 109711 56798467 ~ 56801654 (-) True G1190108
TU1357450 lncRNA downstream 122761 56782095 ~ 56788604 (-) True G1190109
TU1357526 lncRNA upstream 1062 56958708 ~ 56958908 (-) True G1190175
TU1357528 lncRNA upstream 2946 56960592 ~ 56962949 (-) False LOC110486860
TU1357531 lncRNA upstream 2946 56960592 ~ 56962949 (-) True LOC110486860
TU1357536 lncRNA upstream 34691 56992337 ~ 56992798 (-) True G1190180
TU1357542 lncRNA upstream 50955 57008601 ~ 57008822 (-) True G1190186
XM_036941589.1 mRNA downstream 660440 56227043 ~ 56250925 (-) False LOC110515093
XM_036941587.1 mRNA downstream 707555 56125290 ~ 56203810 (-) False LOC110539043
XM_036941588.1 mRNA downstream 707555 56125290 ~ 56203810 (-) True LOC110539043
XM_036941573.1 mRNA downstream 800394 56088292 ~ 56110971 (-) False LOC110485237
XR_005035604.1 mRNA downstream 800394 56089382 ~ 56110971 (-) False LOC110485237
XM_036941595.1 mRNA upstream 4431 56962077 ~ 57006647 (-) False LOC110486860
XM_036941596.1 mRNA upstream 4431 56962077 ~ 57006647 (-) False LOC110486860
XM_036941597.1 mRNA upstream 4431 56962077 ~ 57006647 (-) False LOC110486860
XM_036941600.1 mRNA upstream 4431 56962077 ~ 57006647 (-) False LOC110486860
XM_036941599.1 mRNA upstream 4431 56962077 ~ 57007436 (-) False LOC110486860
TU1356891 other downstream 237127 56670293 ~ 56674238 (-) False G1189660
TU1356892 other downstream 237127 56670293 ~ 56674238 (-) True G1189660
TU1356525 other downstream 800381 56107944 ~ 56110984 (-) True LOC110485237
TU1356465 other downstream 995480 55912247 ~ 55915885 (-) False G1189279
TU1357552 other upstream 123171 57080817 ~ 57085471 (-) True LOC110486894
TU1357558 other upstream 131525 57089171 ~ 57089915 (-) True G1190199
TU1357787 other upstream 538342 57495988 ~ 57499155 (-) True G1190405
TU1357845 other upstream 741605 57699251 ~ 57701824 (-) False LOC110486915
TU1357843 other upstream 744890 57702536 ~ 57706790 (-) True LOC110486915

Expression Profile