RNA id: TU1357531


Basic Information

Item Value
RNA id TU1357531
length 1770
lncRNA type read_through
GC content 0.38
exon number 2
gene id LOC110486860
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 56960592 ~ 57007990 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAAGTCCAACTGAATTATTAGCTTTTGTGTAGGTCGCCTAGTCGAAAGGCTAACTCATTAATGTATTGTTTGGTCTCCTGGTTGTATATGTACAGTAATGTCATGCAGGAAAACAAATTCCTCCCAGATCCTTTCTACTTTGGGGAagctcccctgctctcctctctttacaCATACATGTGTGGAACAGAAATAGGTTCGGATGTGCTTCAGAAGGATGACCAAAAACGTTATTTTTACCGTGTTTTATGTGTTTTTACTGTGGTCTAAATTGTCTGGTAAAGCTTCCTGTCTTTTATTTTTGAGGATTACAGTGGGCGGTAGCTGTGGGCTGTGACTCTGCTAGTGGGACGGCCCATTTTAACCTGTTAACATTCTATTTTACTTTGCTTACCTACAGTAGGTAATGGAGTTAGATGCGGGCATAACATTCTCTTCCTGTTGTCAGGAAAACATGGGCTACAGACCTTTGAGGCAAAAGAGGTTCGTTCTTCATTTCAACTCTTTTGCCAGTACTTTTCAAAGTTAATGCTTATAAAGCTTCTACAATTAACACCAAATGAATAACTACAAAACGCCATGACGTTTCACTTCAATAGGAACTATGTGTTTACTTGCAAGTATCCTTATATACTTATCAAAGTaatgtgtattatactgtaaatgAGATACTCAAATAAGTAAAAAAGAccttactgtattttatttaaaaacatcTGCTTCCAGATCAAACATTATTTGTAACAATCATTTATAAATGTGAGGGTGATATTACAAACAAGTACATTATTTGTATGATTTGTCTTGGGCATTAATGTTTGAATGTGTTTTAGAATACTGTAACAGAATAAACTGTTATTAATGCGCTTTAACTCTGTTTCATTCTTGTCCTAGTTGGTCTTCTGTTGCTTTAATTCCACCTCTTATGAAATAGTAGCATACATTTTACAATCAACAGTTGCTGTTCCTCTTATGTCTTAAGGCTGGACAAAGCATAGAGATGTTTGAACTAAGATTCTTTGTTACTGAACAAATATAACATGTCACTTTAAACAGTTGATTTCTATGTGtgtcactttttattttttataaccaGAAAGCATTATGTATATGCTTAATCTTTTACGCTGTCCTCCGATCAGATGGTTGTGTGAACCTGTTGGTTTGCTATGGATCATGTGAACCTGTTGGTTTGCTATGGATCATGTGAACCTGTTGGTTTGCTATGGATCATGTGAACCTGTTGGGTTGCTATGGAacatgtggatctgttgggttgCTATGGAACATGTGGACCTGTTGGGTTGCTATGGAACATGTGGACCTGTTGGGTTGCTATGGAACATGTGGACCTGTTGGATTGCTATGGAACATGTGGACCTGTTGGGTTGCAACAGGAATGAGCTATTGGACATTGTAACCCAATGTATCTCTTCACTACCCGCAAAACTGGTTGAAATATGTAATTTCAACAGCAAAACTAGTTAAATGTTTTTTCAACCAGTTTTGCTCACTGAGTATGGACATGGGGGAGCTGGAAATTGTGTCCTCCGGTGTTCTGTTGAGGAACAGCTGTTTTTCCTGACTAGGAAATGTTCCGGTCTAGACTAAATGGTCAGGAGAACTCTTGTCCCTCCTGTATGATGATGTGGGTGTTCTATGGCTGTGCTGTTCTGCAATTCATTACTTTGGTTTCAGCTTTCTATTGTGTGACCTGATTATGCACGTATTAACCAATAAAACACTAGCAACGTGTGACCTCTACCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1357526 lncRNA downstream 1684 56958708 ~ 56958908 (-) True G1190175
TU1357466 lncRNA downstream 152479 56807689 ~ 56808113 (-) True G1190123
TU1357465 lncRNA downstream 152954 56807407 ~ 56807638 (-) True G1190122
TU1357462 lncRNA downstream 157675 56802674 ~ 56802917 (-) True G1190119
TU1357449 lncRNA downstream 158938 56798467 ~ 56801654 (-) True G1190108
TU1357536 lncRNA upstream 29388 56992337 ~ 56992798 (-) True G1190180
TU1357542 lncRNA upstream 45652 57008601 ~ 57008822 (-) True G1190186
TU1357563 lncRNA upstream 66480 57029429 ~ 57029699 (-) True G1190204
TU1357565 lncRNA upstream 71672 57034621 ~ 57034925 (-) True G1190206
TU1357576 lncRNA upstream 93977 57056926 ~ 57057224 (-) True G1190215
XR_005035610.1 mRNA downstream 2946 56911365 ~ 56957646 (-) False LOC110486859
XM_036941592.1 mRNA downstream 2946 56923287 ~ 56957646 (-) False LOC110486859
XM_036941593.1 mRNA downstream 2946 56923287 ~ 56957646 (-) True LOC110486859
XM_036941589.1 mRNA downstream 709667 56227043 ~ 56250925 (-) False LOC110515093
XM_036941588.1 mRNA downstream 756782 56125290 ~ 56203810 (-) True LOC110539043
XR_005035612.1 mRNA upstream 91504 57054453 ~ 57085520 (-) False LOC110486894
XM_036941604.1 mRNA upstream 91504 57054453 ~ 57085521 (-) False LOC110486894
NM_001160603.2 mRNA upstream 131363 57094312 ~ 57099778 (-) True nduba
XM_036939772.1 mRNA upstream 149960 57112909 ~ 57129442 (-) True LOC110485244
XM_036941617.1 mRNA upstream 199026 57161975 ~ 57164019 (-) True LOC110486881
TU1356891 other downstream 286354 56670293 ~ 56674238 (-) False G1189660
TU1356892 other downstream 286354 56670293 ~ 56674238 (-) True G1189660
TU1356525 other downstream 849608 56107944 ~ 56110984 (-) True LOC110485237
TU1356468 other downstream 1044707 55912247 ~ 55915885 (-) False G1189279
TU1357552 other upstream 117868 57080817 ~ 57085471 (-) True LOC110486894
TU1357558 other upstream 126222 57089171 ~ 57089915 (-) True G1190199
TU1357787 other upstream 533039 57495988 ~ 57499155 (-) True G1190405
TU1357845 other upstream 736302 57699251 ~ 57701824 (-) False LOC110486915
TU1357843 other upstream 739587 57702536 ~ 57706790 (-) True LOC110486915

Expression Profile