RNA id: TCONS_00042545


Basic Information

Item Value
RNA id TCONS_00042545
length 3008
RNA type mRNA
GC content 0.48
exon number 14
gene id XLOC_021399
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 1730663 ~ 1748141 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGTGTCGTACTGAGCGTCATTCACACGAGACGAGAGATATTACAGCTGTTTTTAGAGCAGAGAGACGGACACTTTTACAAAGGACTTCAACCAGAGACATTATCAGTCAGAAACCCTTCGGCTGTGGATCGTTTTCCGACTGGTACTCTCAAACCAGAGGATATGGAGAAAACGGAGCAGAAATGGTCCTGTGGTGCATGGTTTCGGCAGTGTTGCTGCTCCTGCCGAAAATCTCACAAGAACACAAACAGCACCCCACACGCTGCTAATACAACCGCAGAAAAAACAGAGACACCAGCCACAGgCAGCCTTCTGGAAGTGCGCTCTGTAAACCTCCTCAAGTCCAGCAAAGAGCAGAACCGGCTAGAGCATCACACAGAGCGATACCGCAGTGAAAACCTGATCATCCGCAGAGGACAGACCTTCCAGATGCAGATAGAGCTCTCCAGAGCCTTCGACCCAAAGACGGATAAACTCCACCTGGATCTCAAACTGGGTGATCTTCCAGATGTTTCCAAAGGCACACATGTGGTTGTCCCTTTGGTTGAGGAGCTGCAGGATAACTGCTGGGAGGCCAAAATAGTAGAACAGAAGGGCAGATTgatcaaactgtctgtcaactcTCTGCCGACCGCTCCGATTGGCAAATACAAGCTCGGTGTTGCAACAAGTTGCCCTGTGGGTGAATCCATGTCCCCATACAACCCTGACAACGACATCTACATGCTGTTCAACCCCTGGTGTGAAGAGGACTCGGTGTACATGGACAGTGAGAAAGAGAGGAAGGAGTATGTTTTGAATGACATGGGCATCATCTATTATGGGACGGACAGTCAGATCGGATACAGAACTTGGAATTTTGGCCAGTTTGATAAAAGCATCCTTCCCGCGTGTCTGTTTCTGCTGGAGCGCAGTGGGGCTCCAGCTTCAGGATGGGGGGATCCTGTGAACGTGGTCAGGCTTTTGTCTGCAATGATAAACGCTCCTGATGACAATGGTGTGTTGGTCGGCAACTGGTCAGGCACGTACGATGATGGCACGGCCCCCACATTCTGGAGTGGCAGCAGTGACATTTTGAGACAGTACTACAACAACGGAGGAACGCCGGTAAGATACGGACAGTGCTGGGTCTTCTCTGGCGTCACCACTTCAGTGATGAGGTGTTTAGGCATTCCCACCCGGAGCATTACAAACTTCGAGTCTGCTCACGACACTGACGCTTCTTTGACGACAGACGTGTACTTGGATGAGAACCATGAGCTGATCGAGGAGCTTTGCAGCGATTCTGTCTGGAACTTTCATGTGTGGAATGACTGCTGGATGGCCCGTCCCGATCTGCCCGCAGGTTTGGGGGGCTGGCAAGTAGTAGATGCCACCCCTCAGGAGACCAGTCAGGGCGCTTTTCGCTGCGGTCCCGCTTCGGTCGCAGCTGTCCGAAATGGACTGGTTTACCTCAAGCATGACACACCGTTCGTATTCGCAGAGGTGAACAGTGATAAGGTGTACTGGCAGCGGACTGCAGATGGCTCCTTCACTCCTGTCCAGATTAAGAAGAAAGCAGTAGGTCACTGCATCAGCACTAAAGCAGTCGGCTCTGACGAACGCGAAGACGTCACACACCTCTACAAATACCCAGAAGACTCAGAGGAGGAGCGCATTGCAGTGGAAACAGCCGTTCAGCATGGCTCTAAAGCTGGACTCTACGAAATCTCCAGTGTTAACGACGTCAGTATTGAGATCTCGATGGATGGTGAAGACCCTCAGCTGGGCTCAGATGCTAATCTGGCCATCACTGTGAAGAACAGCAGCTCAGAGATGCGTACTTTCCAGCTCAGTGCTCAGGTGGCTGTAACGTACTACACTGGGGTTTATAAAGGTACAGTGCGGAAGGACCAGATATCCATCGAACTGAAGCCTAATGAAGCTGAGACTGTGGAGTGGACTTTGCTGTACGATCACTATAAAGATCATTTGGTGGACCAGGCCATGCTGATGCTCATACTCACGGGACGGGTTAATGAGACCAAACAGGTCCTGGTAAACCAGTTTCACTTCAGACTGCGCACACCCGACCTGGCCATCAAAACTGAAGGAGATGCTGTTGTTGGTAAAGAGTTGAAGGCTTCGATCACTTTCCGCAATCCTCTTAAGCAAACGCTGAAGAACGTAAAGTTTCGCATTGAAGGACTGGGGCTGCAGCACGTCAGAGAGATTTCACACGGAAACATTGAAAGCTTGGCCACAGTGACTCTGACGGAGACGTTTATTCCTCTGGAGGCAGGGCAACACAAACTGCTGGCTGCACTGGACTCACGGCAGCTGCCTCAAGTCCATGGAGTCGCCAACATCACAGTCAAAGCAAACTGAAGGAAAACCTCTGCAAGACCAGAGCCCACTCTGCACTGGGGCTTCAGTGGTTAGAGAAATTAGCAAAAGTGAAGGGCATAAAAAATTAAACTGGAATGCAGCCCTTGAGGACTTCAGTTTGGAATGACACTTCAATATGGCGGCCATGATTTTTTCACTCTGAAGTGCCCTTCGATGGGTAATGCATCCTATTTTAAATGCACCGTATTTTGTAATGACTTGTGAAAAATCTTGTATTTATTGTGTGACTTGTTAcgggaaaaaaatatatgttttgtccTGTTATTCATCTTTCCTAAGTTATTTAAATGCTAAGCTCTAGTAGAATTCTTCATGCAAAAATAGTATGTAGTAATAGTAAATCAGCGCCTGTAGTAGATTAATACTAACAGTAGTAGAAATTTAAATGCTTCTGAATTAAGTGAAATCAAACAAGTTCCCTCCTCAAAAGATCCCTGTCTGAATGGTTCTtcaattcattctttaattttgaAGGACCCTGCGAAGTGGACAGTTTTGAGCACTACACTATGGCAACCCTTATTTTTACTTCGAAGTGCACTTCAGAGGGCAATGAATCCCGTTTGGAAGTcaccatggctgtttctcaatatgcattctttaaCGGTCTCGTGTCCT

Function

GO:

id name namespace
GO:0018149 peptide cross-linking biological_process
GO:0046872 metal ion binding molecular_function
GO:0003810 protein-glutamine gamma-glutamyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9032 Predicted to enable protein-glutamine gamma-glutamyltransferase activity. Predicted to be involved in peptide cross-linking. Is expressed in second tier layer of breeding tubercle and spinous layer of breeding tubercle. Human ortholog(s) of this gene implicated in autosomal recessive congenital ichthyosis 1. Orthologous to human TGM1 (transglutaminase 1).

Ensembl:

ensembl_id ENSDART00000149545

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042544 lncRNA upstream 5161 1718993 ~ 1725502 (+) True XLOC_021398
TCONS_00044764 lncRNA upstream 91682 1638289 ~ 1638981 (+) True XLOC_021396
TCONS_00042534 lncRNA upstream 578605 1147162 ~ 1152058 (+) True XLOC_021393
TCONS_00042533 lncRNA upstream 580315 1147162 ~ 1150348 (+) False XLOC_021393
TCONS_00042530 lncRNA upstream 687846 1033405 ~ 1042817 (+) True XLOC_021391
TCONS_00044765 lncRNA downstream 302760 2050901 ~ 2055246 (+) True XLOC_021400
TCONS_00044766 lncRNA downstream 715028 2463169 ~ 2467474 (+) True XLOC_021406
TCONS_00044767 lncRNA downstream 806157 2554298 ~ 2555505 (+) True XLOC_021408
TCONS_00044651 lncRNA downstream 832907 2581048 ~ 2593612 (+) True XLOC_021410
TCONS_00042561 lncRNA downstream 969843 2717984 ~ 2721386 (+) True XLOC_021412
TCONS_00042543 mRNA upstream 4103 1702624 ~ 1726560 (+) False XLOC_021398
TCONS_00042542 mRNA upstream 32232 1661743 ~ 1698431 (+) True XLOC_021397
TCONS_00042541 mRNA upstream 285828 1414893 ~ 1444835 (+) True XLOC_021395
TCONS_00042540 mRNA upstream 286882 1349277 ~ 1443781 (+) False XLOC_021395
TCONS_00042539 mRNA upstream 286882 1349277 ~ 1443781 (+) False XLOC_021395
TCONS_00042547 mRNA downstream 388203 2136344 ~ 2161478 (+) False XLOC_021401
TCONS_00042546 mRNA downstream 388203 2136344 ~ 2161478 (+) True XLOC_021401
TCONS_00042548 mRNA downstream 437256 2185397 ~ 2189062 (+) True XLOC_021402
TCONS_00042550 mRNA downstream 443632 2191773 ~ 2260732 (+) False XLOC_021403
TCONS_00042549 mRNA downstream 443632 2191773 ~ 2260732 (+) True XLOC_021403
TCONS_00042520 other upstream 1288311 442237 ~ 442352 (+) True XLOC_021384
TCONS_00042519 other upstream 1318004 412542 ~ 412659 (+) True XLOC_021383
TCONS_00042509 other upstream 1417344 309063 ~ 313319 (+) False XLOC_021378
TCONS_00042508 other upstream 1481563 240604 ~ 249100 (+) True XLOC_021377
TCONS_00042596 other downstream 1972900 3721041 ~ 3735009 (+) False XLOC_021425
TCONS_00042666 other downstream 4529034 6277175 ~ 6304274 (+) True XLOC_021459
TCONS_00042675 other downstream 5077547 6825688 ~ 6825802 (+) True XLOC_021466
TCONS_00042706 other downstream 7559433 9307574 ~ 9308561 (+) True XLOC_021488
TCONS_00042716 other downstream 7870072 9618213 ~ 9618335 (+) True XLOC_021493

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000021_05928007_05937412.mRNA True 3880 mRNA 0.42 13 CI01000021 5926775 ~ 5937771 (-)