RNA id: TU1356482


Basic Information

Item Value
RNA id TU1356482
length 3527
lncRNA type read_through
GC content 0.42
exon number 2
gene id G1189292
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55982971 ~ 56063191 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGCTCCTCCATAGACCAGATGCAACAACTGTTGCAGAGCCATCAGAGCTGAGCTACCTCATCAAGTTAATACCTCCGGCCAAGATGACCCGCTCAGTTACAAGGTCCACTCACACCCTCCTCTCCAGCCTGAAGTTGTTTAACGACCACAATAACATTAAGTCATTAGCCAAACCCCATCTCCGTCCtctggatgtcgattaaggcagccccttcCTACAACCAGAGGTCTCTGCTATAGTAGCGGCCAGTCAGTCACAAGGCACAGtaccaggcagagagagagctctgtcagagataTGGGGGGCATCCCTCCTCCCTTTATAGAGGCTAGATCTGGGTTGGGGTCTAATTTATAGAGGCTAGATCTGGGTTGGGGTCTGATCTATAGAGTCTAGATCTGGGTTGGGGTCTGATCTATAGAGTCTAGATCTGGGTTGGGGTCTGATCTATAGAGTCTAGATCTGGGTTAGGGTCTGATTCATAGAGTCTAAATCTGGGTTAGGGTCACTTGAGGGCTcccacatgtgcacacacacaaagtctgacacacacacaaagtctgacacacacacaaagaaaaactccctagaaaggccaaaacctaggaagaaacctagagaggaaccaggctatgtggggtggccagtcctcttctggctgtgccgggtggagattataacaggacatggccaagatgttcaaatgttcataaatgaccagcatggtcgaataataataaggcagaacagttgaaactggagcagcagcacagccaggtggactggggacagcaaggagtcatcatgtcaggtagtcctggggcatggtcctagggctcaggtcctccgagagagagaaagagactataacacaatgaactgttacagtagttcacctccttgagacacaacagtacagtgaactgttacagtaggtcacctcctagagacactataacacactgaactgttacagtcgttcacctcctagagacactataacacactgaacttttacagtagttcaccttctagagacactataacatactgaactgttacagtagttcacctcctagaaagagacaatatgacacactgaactgttacagtagttcacctcctagagacacaacagtacagtgaactgttacagtaggtcacctcctagagacacaacagtacagtgaactgttacagtaggtcacctcctagagacactataacacactgaactgttacagtagttcacctccttgagacacaacagtacactgacctgttacagtaggtcacctcctagagacacaataacacagtgaactgttacagtacgtcacatcctagagacactataacacactgaacttttacagtagttcaccttctagagacactataacatactgaactgttacagtagttcacctcctagaaagagacaatatgacacactgaactgttacagtagttcacctctttgagacactataacacactgaactgttacagtaggtcacctccttgagacacaacagtatactgaactgttacagtagttcacctccttgagacacaacagttcactgaactgttacagtagttcacctcctagatacactataacaaactgaacttttacagtagtCCACCTCCtacagacacaataacacacggaactgttacagtatttcatgtcttcgtaagagacacaataacacactgaactgttacagtagtacacctcctagagacacaataacacactgaactgttacagtagttcaccttctagagacactataacacactgaactgttacactagttcacctcctagagatactataacacactgaactgttacagtagttcacctcttagagacactagaacacactgaactgtttcaGTTGTTCACCTCCTAGAGCCACGATAACACACCGAACTGATACAGTATTTCACGTCTTAGTGacagacactataacacactgaactatcacagtagttcacctcttagagacactatgacacactgaactgttacagtagttcacctcctagtgacacaataacacactgaactgtcacagtagttcacctcctagtgacactataacacactgaactgttacagtagttcacctcatagagacactataacacactgaactgttacagtaggtcacctccttgagacacaacagtacactgaactgttacagtagttcacatcctggtgacactacaacacactgaaatgttacaatagttcacctcctagagacacaataacacacggaactgttacagtatttcatctcTTAgtaagagacacaataacacactgaactgttacagtagttcacgtcttagtgagagacactataacacactgaactgtcacagtagttcagctcctggagacactataacacactgaactgttacagtagttcacctccttgagacactctaacacactgaactgttacagtagttcacctcttagaaacactataacacactaaactgttacagtagttcacctcttagagacactataacacactaaactgttacagtagttcacctcttagagacactataacactctgaactgttacagtagttcacctcttagaaacactataacacactaaactgttacagtagttcaccacTTAGAGAAACTATAACactctgaactgttacagtagttcacctcttagaaacactataacacactaaactgttacagtagttcaccacTTAGAGAAACTATAACactctgaactgttacagtagttcacctcttagagacactataacactctgaactgttacagtagttcacctcttagaaacactataacacactaaactgttacagtagttcacctcttagagacactataacactctgaactgttacagtagttcacctcttagaaacactataacacactaaactgttacagtagttcacctcttagagacactataacactctgaactgttacagtagttcaccacTTAGAGAAACTATAACactctgaactgttacagtagttcacctcttagaaacactataacacactaaactgttacagtagttcacctcttagagacactataacactctgaactgttacagtagttcaccacTTAGAGAAACTATAACactctgaactgttacagtagttcacctcttagaaacactataacacactgaactgttacagtagttcacctcctggtgacactataacacactgaactgttacaatagttcacctcataaatagagacacaataacacactaaactgttacagtagttcacctcccaggagacaatataacacactgaactgttacagtagttccacacctagagacactataacacactgaacttttacagtagttcaccttcaagagaaactataacacactgaacaattacagtagttcacatcctggtgacactatatcaattcaaatcaaatcaaatgtatttatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1356485 lncRNA downstream 347 56000004 ~ 56004128 (-) True G1189293
TU1356481 lncRNA downstream 50322 55944655 ~ 55954153 (-) True G1189291
TU1356422 lncRNA downstream 177321 55826382 ~ 55827154 (-) True G1189238
TU1356378 lncRNA downstream 245446 55758169 ~ 55759029 (-) True G1189200
TU1355924 lncRNA downstream 369879 55634306 ~ 55634596 (-) True G1188840
TU1356370 lncRNA upstream 52972 56116163 ~ 56116471 (-) True G1189193
TU1356359 lncRNA upstream 56360 56119551 ~ 56123585 (-) False G1189186
TU1356360 lncRNA upstream 56360 56119551 ~ 56123585 (-) False G1189186
TU1356361 lncRNA upstream 56360 56119551 ~ 56123585 (-) False G1189186
TU1356362 lncRNA upstream 56360 56119551 ~ 56123585 (-) True G1189186
XM_036941581.1 mRNA downstream 451975 55533247 ~ 55552500 (-) False LOC110538789
XM_036941579.1 mRNA downstream 494557 55435136 ~ 55509918 (-) False LOC110485238
XM_036941580.1 mRNA downstream 494557 55435136 ~ 55509918 (-) False LOC110485238
XM_036941575.1 mRNA downstream 585414 55394864 ~ 55419061 (-) False LOC110519575
XM_036941574.1 mRNA upstream 25101 56088292 ~ 56110969 (-) False LOC110485237
XM_036941573.1 mRNA upstream 25101 56088292 ~ 56110971 (-) False LOC110485237
XR_005035604.1 mRNA upstream 26191 56089382 ~ 56110971 (-) False LOC110485237
XM_036941587.1 mRNA upstream 62099 56125290 ~ 56203810 (-) False LOC110539043
XM_036941588.1 mRNA upstream 62099 56125290 ~ 56203810 (-) True LOC110539043
TU1356467 other downstream 88590 55912224 ~ 55915885 (-) False G1189279
TU1356525 other upstream 44753 56107944 ~ 56110984 (-) True LOC110485237
TU1356891 other upstream 607102 56670293 ~ 56674238 (-) False G1189660
TU1356892 other upstream 607102 56670293 ~ 56674238 (-) True G1189660
TU1357552 other upstream 1017626 57080817 ~ 57085471 (-) True LOC110486894
TU1357558 other upstream 1025980 57089171 ~ 57089915 (-) True G1190199

Expression Profile