RNA id: TU1356422


Basic Information

Item Value
RNA id TU1356422
length 405
lncRNA type intronic
GC content 0.34
exon number 2
gene id G1189238
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55826382 ~ 55827154 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcaggagagaaagcatgtttccaagaacgatgtatcaatgaagagatatgtgaaaaacaccttgaggcttgattctaaaaaacgtttgccatgttttcagtcgatattatggagttaatttggaaaaaagtttgcgttttgaggactgaatttatggattttttttggtagccaaatgtgatgtataaaacggagctatttctaatacacaaggaatctttttggaaaaactgagcatctgctatctaactgagagtatcctcattgaaaacatcagaagttcttcaaaggaaaaactgaacatttgctatctgagagtctcctcaatgaaaacatctgaagttcttcaaaggtaaatgatttttttgaatgcttttctgtttttttgtgtaaatgttgccagc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1356378 lncRNA downstream 67353 55758169 ~ 55759029 (-) True G1189200
TU1355924 lncRNA downstream 191786 55634306 ~ 55634596 (-) True G1188840
TU1355918 lncRNA downstream 201321 55624859 ~ 55625061 (-) True G1188834
TU1355915 lncRNA downstream 206326 55619657 ~ 55620056 (-) True G1188831
TU1355860 lncRNA downstream 251845 55533247 ~ 55574537 (-) True LOC110538789
TU1356481 lncRNA upstream 117501 55944655 ~ 55954153 (-) True G1189291
TU1356483 lncRNA upstream 155817 55982971 ~ 56063191 (-) False G1189292
TU1356485 lncRNA upstream 172850 56000004 ~ 56004128 (-) True G1189293
TU1356482 lncRNA upstream 177321 56004475 ~ 56063191 (-) True G1189292
TU1356480 lncRNA upstream 191914 56019068 ~ 56021552 (-) True G1189290
XM_036941581.1 mRNA downstream 273882 55533247 ~ 55552500 (-) False LOC110538789
XM_036941579.1 mRNA downstream 316464 55435136 ~ 55509918 (-) False LOC110485238
XM_036941580.1 mRNA downstream 316464 55435136 ~ 55509918 (-) False LOC110485238
XM_036941575.1 mRNA downstream 407321 55394864 ~ 55419061 (-) False LOC110519575
XM_036941583.1 mRNA upstream 202267 56029421 ~ 56036818 (-) False LOC110486851
XM_036941584.1 mRNA upstream 202267 56029421 ~ 56036822 (-) False LOC110486851
XM_036941574.1 mRNA upstream 261138 56088292 ~ 56110969 (-) False LOC110485237
XM_036941573.1 mRNA upstream 261138 56088292 ~ 56110971 (-) False LOC110485237
XR_005035604.1 mRNA upstream 262228 56089382 ~ 56110971 (-) False LOC110485237
TU1355745 other downstream 371148 55434816 ~ 55455234 (-) False LOC110485238
TU1355744 other downstream 371148 55435141 ~ 55455234 (-) True LOC110485238
TU1355681 other downstream 613667 55211499 ~ 55212715 (-) True LOC110516592
TU1355395 other downstream 799934 55022648 ~ 55026448 (-) False LOC110486836
TU1356467 other upstream 85070 55912224 ~ 55915885 (-) False G1189279
TU1356465 other upstream 85093 55912247 ~ 55915885 (-) False G1189279
TU1356466 other upstream 85093 55912247 ~ 55915885 (-) False G1189279
TU1356468 other upstream 85093 55912247 ~ 55915885 (-) False G1189279
TU1356469 other upstream 85093 55912247 ~ 55915885 (-) True G1189279

Expression Profile