RNA id: TCONS_00042909


Basic Information

Item Value
RNA id TCONS_00042909
length 1329
RNA type mRNA
GC content 0.46
exon number 3
gene id XLOC_021619
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 19670085 ~ 19673769 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGTGGGTCATGTGACCGTGAGTGCGGCGGCTGCTCGCTCGAGCCTCGTCTTTGAGCTGCTGCTAACACTCGTCAGTGTCCCGTACAGCAGCTCATCATAACCCAAGATCAAACCCTTCATAACCAGAGGACAGGTCTTGTCGAACATAAAAACCGTTTTTCTTCTGTGGGTCAGACTGGACAACCTACCCTTATGAAATGGATAATGGGGACTGGGGACATAGGTTGACTCACCCAGTCACCTTAAATGTTGGAGGACACCTCTACACCACCTCCATTTCCACTCTTCAGCGTTACCCAGACTCCATGCTGGGTGCCATGTTTCGTGGTGACTTCCCCACTACACGGGACGCTCAGGGAAACTATTTCATTGATCGGGATGGGACGCTTTTCCGCTATATATTGAACTTCCTGCGCACATCCGAGCTCACTCTTCCTGTAGACTTCACTGAGCTGGACCTTCTGCGAAAAGAAGCAGACTTCTATCAGATCGAGCCTTTAATCCAATGCCTCAATGACCCGAAACCTCTGTACCCGCTGGACACCTTCGAGCAGGTGGTGGAGTTGTCCAGCACACGCAAGCTGTCCAAGTACTCAAATCCCGTAGCGGTCATCATCACACAGCTAACCATAACCACCAAAGTCCACTCGCTGCTTGAAGGAATATCCAACAACTTCACCAAATGGAACAAGCACATGATGGACACCAGAGACTGTCAGGTGTCCTTCACCTTTGGACCGTGTGACTATCACCAAGAGGTGTCTCTGCGGGTGCACCTCATGGACTACATCACCAAACAGGGCTTCACCATCAGGAACACACGGGTGCACCACATGAGCGAACGGGCCAATGAGAACACTGTGGAGCATCACTGGACTTTCTGCAGGCTGGCGTATAAAGTAGAAGATTGACCAGTTCATGAATGTGCTTTCACGTGTGCTTGCTGCTGTGTCCGAGGCCATGTTTAAATCTGTAGAAATTCCAGTGTTGGTTAATTCAGACCAATTGAAAAGGAAAAAAGGGAATTAAGTGTAAAGTTCACATCATGCCATGTGGAATACTTTATAATTCATAATTCGCAAAAAATCGAAAGGATCAAAGTGGGATAAGGAAAAAAAGCATATTCAGATTATGCAATTTCACAAATCTGTGAACCCCTTGACCCCTTGTGTAAAAAAAGATAGTTTCaccagaaattcattcattccatcAGATCAGACTTCTGTCAAACATTGTGCACACACTATGTGCAACATCAAGATGTTAGTGTGCATGTATTTCTAACACGTTCTGTAAGTATTAAATGTCCACATGCTGTAAATCAAAA

Function

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-14 Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within protein homooligomerization. Orthologous to human KCTD6 (potassium channel tetramerization domain containing 6).

Ensembl:

ensembl_id ENSDART00000031872

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042904 lncRNA upstream 66177 19594239 ~ 19603908 (+) False XLOC_021616
TCONS_00042905 lncRNA upstream 66177 19597676 ~ 19603908 (+) True XLOC_021616
TCONS_00042902 lncRNA upstream 69190 19594239 ~ 19600895 (+) False XLOC_021616
TCONS_00042903 lncRNA upstream 71764 19594456 ~ 19598321 (+) False XLOC_021616
TCONS_00044812 lncRNA upstream 193934 19473396 ~ 19476151 (+) True XLOC_021614
TCONS_00042914 lncRNA downstream 102691 19776460 ~ 19778156 (+) False XLOC_021623
TCONS_00042921 lncRNA downstream 139942 19813711 ~ 19816370 (+) False XLOC_021624
TCONS_00042925 lncRNA downstream 303560 19977329 ~ 19978737 (+) True XLOC_021625
TCONS_00044813 lncRNA downstream 671541 20345310 ~ 20361426 (+) True XLOC_021628
TCONS_00042939 lncRNA downstream 839372 20513141 ~ 20516174 (+) True XLOC_021633
TCONS_00042908 mRNA upstream 2327 19655356 ~ 19667758 (+) True XLOC_021618
TCONS_00042907 mRNA upstream 8411 19655301 ~ 19661674 (+) False XLOC_021618
TCONS_00042906 mRNA upstream 17170 19606291 ~ 19652915 (+) True XLOC_021617
TCONS_00042900 mRNA upstream 65672 19590006 ~ 19604413 (+) False XLOC_021616
TCONS_00042901 mRNA upstream 66390 19590598 ~ 19603695 (+) False XLOC_021616
TCONS_00042910 mRNA downstream 2011 19675780 ~ 19677933 (+) True XLOC_021620
TCONS_00042911 mRNA downstream 17377 19691146 ~ 19695976 (+) True XLOC_021621
TCONS_00042912 mRNA downstream 27818 19701587 ~ 19711988 (+) True XLOC_021622
TCONS_00042913 mRNA downstream 85359 19759128 ~ 19809027 (+) False XLOC_021623
TCONS_00042915 mRNA downstream 117193 19790962 ~ 19798264 (+) False XLOC_021623
TCONS_00042898 other upstream 92839 19560074 ~ 19577246 (+) False XLOC_021615
TCONS_00042896 other upstream 451145 19217528 ~ 19218940 (+) True XLOC_021613
TCONS_00042887 other upstream 487697 19177891 ~ 19182388 (+) False XLOC_021608
TCONS_00042879 other upstream 938686 18731322 ~ 18731399 (+) True XLOC_021602
TCONS_00042875 other upstream 978603 18688357 ~ 18691482 (+) False XLOC_021600
TCONS_00042916 other downstream 121669 19795438 ~ 19799039 (+) False XLOC_021623
TCONS_00042917 other downstream 127367 19801136 ~ 19808251 (+) True XLOC_021623
TCONS_00042920 other downstream 139936 19813705 ~ 19821737 (+) False XLOC_021624
TCONS_00042922 other downstream 139950 19813719 ~ 19821463 (+) False XLOC_021624
TCONS_00042927 other downstream 513856 20187625 ~ 20187739 (+) True XLOC_021627

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_05842665_05846705.mRNA False 1341 mRNA 0.46 5 CI01000001 5842665 ~ 5846924 (+)
bowfin (Amia calva) AMCG00017033 True 735 mRNA 0.56 2 CM030122.1 42289746 ~ 42290831 (+)