Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00043088 |
| length | 1732 |
| RNA type | nonsense_mediated_decay |
| GC content | 0.45 |
| exon number | 11 |
| gene id | XLOC_021710 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 25832689 ~ 25865856 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0031018 | endocrine pancreas development | biological_process |
| GO:0009617 | response to bacterium | biological_process |
| GO:0048856 | anatomical structure development | biological_process |
| GO:0070365 | hepatocyte differentiation | biological_process |
| GO:0055088 | lipid homeostasis | biological_process |
| GO:1990798 | pancreas regeneration | biological_process |
| GO:0050796 | regulation of insulin secretion | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0003323 | type B pancreatic cell development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0004879 | nuclear receptor activity | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0003707 | steroid hormone receptor activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| ko04152 | AMPK signaling pathway |
| ko04950 | Maturity onset diabetes of the young |
| ko03000 | Transcription factors |
| ko03310 | Nuclear receptors |
| id | description |
|---|---|
| ZDB-GENE-030131-1077 | Enables DNA-binding transcription factor activity. Acts upstream of or within pancreas regeneration; response to bacterium; and type B pancreatic cell development. Predicted to be located in nucleus. Is expressed in gut; intestinal bulb primordium; liver; pleuroperitoneal region; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Fanconi renotubular syndrome 4; familial combined hyperlipidemia; hypoglycemia; maturity-onset diabetes of the young type 1; and type 2 diabetes mellitus. Orthologous to human HNF4A (hepatocyte nuclear factor 4 alpha). |
| ensembl_id | ENSDART00000124103 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00044827 | lncRNA | upstream | 550026 | 25305436 ~ 25306603 (+) | True | XLOC_021705 |
| TCONS_00043076 | lncRNA | upstream | 560815 | 25291955 ~ 25295814 (+) | False | XLOC_021704 |
| TCONS_00043067 | lncRNA | upstream | 710216 | 25139391 ~ 25146413 (+) | True | XLOC_021700 |
| TCONS_00043052 | lncRNA | upstream | 1247426 | 24606253 ~ 24609203 (+) | False | XLOC_021693 |
| TCONS_00043047 | lncRNA | upstream | 1252761 | 24599057 ~ 24603868 (+) | False | XLOC_021693 |
| TCONS_00043093 | lncRNA | downstream | 5408 | 25869374 ~ 25871801 (+) | True | XLOC_021711 |
| TCONS_00044828 | lncRNA | downstream | 727158 | 26591124 ~ 26595947 (+) | False | XLOC_021722 |
| TCONS_00044829 | lncRNA | downstream | 727585 | 26591551 ~ 26625133 (+) | False | XLOC_021722 |
| TCONS_00044830 | lncRNA | downstream | 727647 | 26591613 ~ 26595947 (+) | False | XLOC_021722 |
| TCONS_00044831 | lncRNA | downstream | 727726 | 26591692 ~ 26599411 (+) | True | XLOC_021722 |
| TCONS_00043084 | mRNA | upstream | 29259 | 25821055 ~ 25827370 (+) | False | XLOC_021709 |
| TCONS_00043085 | mRNA | upstream | 29636 | 25822742 ~ 25826993 (+) | True | XLOC_021709 |
| TCONS_00043083 | mRNA | upstream | 87864 | 25708787 ~ 25768765 (+) | True | XLOC_021708 |
| TCONS_00043080 | mRNA | upstream | 407757 | 25354856 ~ 25448872 (+) | False | XLOC_021707 |
| TCONS_00043082 | mRNA | upstream | 407757 | 25428513 ~ 25448872 (+) | True | XLOC_021707 |
| TCONS_00043092 | mRNA | downstream | 4671 | 25868637 ~ 25874877 (+) | False | XLOC_021711 |
| TCONS_00043094 | mRNA | downstream | 15354 | 25879320 ~ 25942859 (+) | False | XLOC_021712 |
| TCONS_00043096 | mRNA | downstream | 29054 | 25893020 ~ 25942859 (+) | True | XLOC_021712 |
| TCONS_00043097 | mRNA | downstream | 129720 | 25993686 ~ 26003858 (+) | False | XLOC_021713 |
| TCONS_00043099 | mRNA | downstream | 131761 | 25995727 ~ 25998246 (+) | False | XLOC_021713 |
| TCONS_00043063 | other | upstream | 871771 | 24983302 ~ 24984858 (+) | True | XLOC_021698 |
| TCONS_00043051 | other | upstream | 1250255 | 24606237 ~ 24606374 (+) | False | XLOC_021693 |
| TCONS_00043045 | other | upstream | 1252211 | 24598997 ~ 24604418 (+) | False | XLOC_021693 |
| TCONS_00043042 | other | upstream | 1295756 | 24556455 ~ 24560873 (+) | True | XLOC_021691 |
| TCONS_00043041 | other | upstream | 1349348 | 24501965 ~ 24507281 (+) | True | XLOC_021690 |
| TCONS_00043095 | other | downstream | 15802 | 25879768 ~ 25897009 (+) | False | XLOC_021712 |
| TCONS_00043098 | other | downstream | 131061 | 25995027 ~ 25995141 (+) | True | XLOC_021714 |
| TCONS_00043112 | other | downstream | 1064777 | 26928743 ~ 26928858 (+) | True | XLOC_021724 |
| TCONS_00043115 | other | downstream | 1115208 | 26979174 ~ 27003981 (+) | False | XLOC_021726 |
| TCONS_00043140 | other | downstream | 2276351 | 28140317 ~ 28148953 (+) | True | XLOC_021742 |
